| Common name: | UPF3 |
| Defline: | (1 of 1) K14328 - regulator of nonsense transcripts 3 (UPF3, RENT3); UPF3 regulator of nonsense transcripts, NMD protein |
| Description: | putative ortholog of Saccharomyces cerevisiae Upf3 and Caenorhabditis elegans SMG-4; interacts with UPF2 |
| Synonyms: | g12225.t1,Cre12.g488100.t1.1,UPF3 |
| Chromosome: | chromosome 12 |
We did not create a plasmid for this gene.
We did not determine any protein-protein interactions for this gene.
| Insertion Junction | Mutant Strain | Insertion Junction Feature | Confidence (%) | Genome Version |
|---|---|---|---|---|
| CLIP2.060890_1 | CLIP2.060890 | 3'UTR | 80 | 6.1 |
| CLIP2.065708_1 | CLIP2.065708 | 5'UTR | 80 | 6.1 |
| CLIP2.066480_1 | CLIP2.066480 | 3'UTR | 80 | 6.1 |
| CLIP2.066480_2 | CLIP2.066480 | 3'UTR | 80 | 6.1 |
| CLIP2.071472_1 | CLIP2.071472 | 3'UTR | 80 | 6.1 |
| CLIP2.071472_2 | CLIP2.071472 | 3'UTR | 80 | 6.1 |
| CLIP2.074355_1 | CLIP2.074355 | 3'UTR | 80 | 6.1 |
| CLIP2.074355_2 | CLIP2.074355 | 3'UTR | 80 | 6.1 |
| CLIP2.076013_2 | CLIP2.076013 | 3'UTR | 63 | 6.1 |
| LMJ.RY0402.147412_1 | LMJ.RY0402.147412 | 5'UTR | 58 | 5.5 |
| LMJ.RY0402.163082_1 | LMJ.RY0402.163082 | intron | 95 | 5.5 |
| LMJ.RY0402.163082_2 | LMJ.RY0402.163082 | intron | 95 | 5.5 |
| PFAM: | PF03467 |
| PANTHER: | PTHR13112 |
| KEGG_ec: | |
| KEGG_orthology: | K14328 |
| KOG: | |
| Gene ontology terms:: | |
| Best arabidopsis TAIR name: | AT1G33980.1 |
| Best arabidopsis TAIR symbol: | ATUPF3,UPF3 |
| Best arabidopsis TAIR defline: | Smg-4/UPF3 family protein |
| Phytozome Locus Page |
Our phenotype screens did not find statistically significant results for this gene.