Gene: Cre12.g509650
Overview
| Common name: | PDS1,PDS |
| Defline: | (1 of 1) K02293 - 15-cis-phytoene desaturase (PDS, crtP); phytoene desaturase |
| Description: | Phytoene desaturase (zeta-carotene-forming), chloroplast precursor [PMID:15579683], [PMID:22912689] |
| Synonyms: | g12358.t1,PDS,Cre12.g509650.t1.1 |
| Chromosome: | chromosome 12 |
Protein Localization
A plasmid for expressing Cre12.g509650 tagged with the fluorescent protein Venus and affinity epitope 3xFLAG is available: pLM005-Cre12.g509650-Venus-3xFLAG
Imaged strain: CSI_LW04E6
Imaging conditions: Tris-Phosphate media, air, 150 uM photons/m2/s, shaking in 96-well plate; imaged after 16 hours.
Classification(s):
chloroplast/homogeneous/pyrenoid depleted
If you reference these protein localization data in a manuscript, please cite: Wang et al. 2023.
 |  |  |  |
| Venus | Chlorophyll | Bright field | Merged |
Protein-Protein Interactions
| Bait ID | Bait Name | Prey ID | Prey Name | Reference |
|---|---|---|---|---|
| Cre16.g662600 | BST1,LCI11,LCI11C | Cre12.g509650 | PDS1,PDS | Mackinder et al. 2017 |
Mutant Strains
| Insertion Junction | Mutant Strain | Insertion Junction Feature | Confidence (%) | Genome Version |
|---|---|---|---|---|
| CLIP2.002067_1 | CLIP2.002067 | 5'UTR | 63 | 6.1 |
| CLIP2.003347_1 | CLIP2.003347 | 3'UTR | 80 | 6.1 |
| CLIP2.003347_2 | CLIP2.003347 | 3'UTR | 80 | 6.1 |
| CLIP2.003858_1 | CLIP2.003858 | 3'UTR | 63 | 6.1 |
| LMJ.RY0402.135240_1 | LMJ.RY0402.135240 | 3'UTR | 73 | 5.5 |
| LMJ.RY0402.170820_1 | LMJ.RY0402.170820 | 3'UTR | 73 | 5.5 |
Gene Annotations
| PFAM: | PF13450 |
| PANTHER: | PTHR10742 PTHR10742:SF278 |
| KEGG_ec: | EC:1.3.99.29 |
| KEGG_orthology: | K02293 |
| KOG: | KOG0029 |
| Gene ontology terms:: | GO:0016117, GO:0016491, GO:0016705, GO:0055114 |
| Best arabidopsis TAIR name: | AT4G14210 |
| Best arabidopsis TAIR symbol: | PDE226,PDS,PDS3 |
| Best arabidopsis TAIR defline: | phytoene desaturase 3 |
| Phytozome Locus Page |
Phenotypes
Our phenotype screens did not find statistically significant results for this gene.