Gene: Cre12.g555951
Overview
| Common name: | PYRD1,RFD1 |
| Defline: | putative riboflavin metabolism-associated deaminase; (1 of 2) 3.5.4.26 - Diaminohydroxyphosphoribosylaminopyrimidine deaminase |
| Description: | Possible bifunctional enzyme of 5-amino-6-(5-phosphoribosylamino)uracil reductase and diaminohydroxyphosphoribosylaminopyrimidine deaminase; Possible cytosine/CMP/dCMP deaminase; Orthologous to AT4G20960, which is known to be a monofunctional pyrimidine deaminase; |
| Synonyms: | PYRD1,g13414.t1,Cre12.g555900.t1.2,RFD1 |
| Chromosome: | chromosome 12 |
Protein Localization
A plasmid for expressing Cre12.g555951 tagged with the fluorescent protein Venus and affinity epitope 3xFLAG is available: pLM005-Cre12.g555951-Venus-3xFLAG
Imaged strain: CSI_LW08H1
Imaging conditions: Tris-Phosphate media, air, 150 uM photons/m2/s, shaking in 96-well plate; imaged after 16 hours.
Classification(s):
chloroplast/homogeneous/pyrenoid depleted
shapes in cytoplasm/uncategorized shapes in cytoplasm
If you reference these protein localization data in a manuscript, please cite: Wang et al. 2023.
 |  |  |  |
| Venus | Chlorophyll | Bright field | Merged |
Protein-Protein Interactions
We did not determine any protein-protein interactions for this gene.
Mutant Strains
| Insertion Junction | Mutant Strain | Insertion Junction Feature | Confidence (%) | Genome Version |
|---|---|---|---|---|
| CLIP2.003421_1 | CLIP2.003421 | intron | 80 | 6.1 |
| CLIP2.003421_2 | CLIP2.003421 | intron | 80 | 6.1 |
| CLIP2.005082_1 | CLIP2.005082 | 3'UTR | 80 | 6.1 |
| CLIP2.005082_2 | CLIP2.005082 | 3'UTR | 80 | 6.1 |
| CLIP2.005342_1 | CLIP2.005342 | 5'UTR | 80 | 6.1 |
| CLIP2.005342_2 | CLIP2.005342 | 5'UTR | 80 | 6.1 |
| CLIP2.006689_1 | CLIP2.006689 | intron | 80 | 6.1 |
| CLIP2.006689_2 | CLIP2.006689 | intron | 80 | 6.1 |
| CLIP2.007418_1 | CLIP2.007418 | CDS | 63 | 6.1 |
Gene Annotations
| PFAM: | PF00383 |
| PANTHER: | PTHR11079 PTHR11079:SF10 |
| KEGG_ec: | EC:3.5.4.26 |
| KEGG_orthology: | K11752 |
| KOG: | |
| Gene ontology terms:: | GO:0003824, GO:0008270, GO:0008835, GO:0009231, GO:0055114 |
| Best arabidopsis TAIR name: | AT4G20960.1 |
| Best arabidopsis TAIR symbol: | |
| Best arabidopsis TAIR defline: | Cytidine/deoxycytidylate deaminase family protein |
| Phytozome Locus Page |
Phenotypes
Our phenotype screens did not find statistically significant results for this gene.