Gene: Cre16.g676150
Overview
| Common name: | MSD3 |
| Defline: | (1 of 1) PTHR11404//PTHR11404:SF22 - SUPEROXIDE DISMUTASE 2 // 37S RIBOSOMAL PROTEIN S26, MITOCHONDRIAL; Mn superoxide dismutase |
| Description: | Expression is up-regulated severalfold in Mn-deficient cells |
| Synonyms: | g16594.t1,Cre16.g676150.t1.1 |
| Chromosome: | chromosome 16 |
Protein Localization
A plasmid for expressing Cre16.g676150 tagged with the fluorescent protein Venus and affinity epitope 3xFLAG is available: pLM005-Cre16.g676150-Venus-3xFLAG
Imaged strain: CSI_LW08H6
Imaging conditions: Tris-Phosphate media, air, 150 uM photons/m2/s, shaking in 96-well plate; imaged after 16 hours.
Classification(s):
secretory pathway/Golgi
secretory pathway/plasma membrane or cell wall
If you reference these protein localization data in a manuscript, please cite: Wang et al. 2023.
 |  |  |  |
| Venus | Chlorophyll | Bright field | Merged |
Protein-Protein Interactions
| Bait ID | Bait Name | Prey ID | Prey Name | Reference |
|---|---|---|---|---|
| Cre11.g476750 | FNR1 | Cre16.g676150 | MSD3 | Wang et al. 2023 |
Mutant Strains
| Insertion Junction | Mutant Strain | Insertion Junction Feature | Confidence (%) | Genome Version |
|---|---|---|---|---|
| CLIP2.008283_1 | CLIP2.008283 | CDS | 80 | 6.1 |
| CLIP2.008283_2 | CLIP2.008283 | CDS | 80 | 6.1 |
| CLIP2.022151_1 | CLIP2.022151 | intron | 80 | 6.1 |
| CLIP2.022151_2 | CLIP2.022151 | intron | 80 | 6.1 |
| CLIP2.037831_1 | CLIP2.037831 | intron | 80 | 6.1 |
| CLIP2.043652_1 | CLIP2.043652 | intron | 80 | 6.1 |
| CLIP2.043652_2 | CLIP2.043652 | intron | 80 | 6.1 |
| CLIP2.045858_1 | CLIP2.045858 | intron | 80 | 6.1 |
| CLIP2.052357_1 | CLIP2.052357 | intron | 80 | 6.1 |
| CLIP2.052357_2 | CLIP2.052357 | intron | 80 | 6.1 |
| LMJ.RY0402.174140_2 | LMJ.RY0402.174140 | 3'UTR | 73 | 5.5 |
| LMJ.RY0402.174381_1 | LMJ.RY0402.174381 | 3'UTR | 73 | 5.5 |
Gene Annotations
| PFAM: | PF00081, PF02777 |
| PANTHER: | PTHR11404 PTHR11404:SF22 |
| KEGG_ec: | EC:1.15.1.1 |
| KEGG_orthology: | |
| KOG: | KOG0876 |
| Gene ontology terms:: | GO:0004784, GO:0006801, GO:0046872, GO:0055114 |
| Best arabidopsis TAIR name: | AT3G10920.1 |
| Best arabidopsis TAIR symbol: | ATMSD1,MEE33,MSD1 |
| Best arabidopsis TAIR defline: | manganese superoxide dismutase 1 |
| Phytozome Locus Page |
Phenotypes
Our phenotype screens did not find statistically significant results for this gene.