| Common name: | REX1-S,TFB5,REX1S |
| Defline: | (1 of 1) K10845 - TFIIH basal transcription factor complex TTD-A subunit (TTDA, GTF2H5, TFB5); TFB5 subunit of general Transcription Factor II H, involved in Nucleotide Excision Repair |
| Description: | Phenotype of insertional mutant implicates this gene in UV-light tolerance and DNA repair; based on RT-PCR, has been described as a bicistronic gene (AY236481), with two proteins encoded on the same transcript: Rex1S (Cre16.g683495) is the small non-essential TFB5 subunit of general Transcription Factor II H, involved in Nucleotide Excision Repair, while Rex1B (Cre16.g683483) is of unknown function; only Rex1S appears strictly necessary for resistance, but Rex1B contributes |
| Synonyms: | REX1-S,TFB5 |
| Chromosome: | chromosome 16 |
We did not create a plasmid for this gene.
We did not determine any protein-protein interactions for this gene.
| Insertion Junction | Mutant Strain | Insertion Junction Feature | Confidence (%) | Genome Version |
|---|---|---|---|---|
| CLIP2.012597_1 | CLIP2.012597 | CDS | 80 | 6.1 |
| CLIP2.012597_2 | CLIP2.012597 | CDS | 80 | 6.1 |
| CLIP2.025179_1 | CLIP2.025179 | intron | 80 | 6.1 |
| CLIP2.025179_2 | CLIP2.025179 | intron | 80 | 6.1 |
| CLIP2.033711_1 | CLIP2.033711 | intron | 80 | 6.1 |
| CLIP2.039635_2 | CLIP2.039635 | gene_edge/mRNA_edge/CDS | 80 | 6.1 |
| CLIP2.055443_3 | CLIP2.055443 | CDS | 80 | 6.1 |
| CLIP2.064649_1 | CLIP2.064649 | CDS | 63 | 6.1 |
| PFAM: | PF06331 |
| PANTHER: | PTHR28580 |
| KEGG_ec: | |
| KEGG_orthology: | K10845 |
| KOG: | |
| Gene ontology terms:: | GO:0000439, GO:0006289, GO:0006355 |
| Best arabidopsis TAIR name: | AT1G12400 |
| Best arabidopsis TAIR symbol: | |
| Best arabidopsis TAIR defline: | Nucleotide excision repair, TFIIH, subunit TTDA |
| Phytozome Locus Page |
Our phenotype screens did not find statistically significant results for this gene.