Gene: Cre17.g729250

Overview

Common name:UPF2
Defline:(1 of 1) K14327 - regulator of nonsense transcripts 2 (UPF2, RENT2); Putative UPF2 regulator of nonsense transcripts
Description:Conserved Protein with MIF4G Domain; Part of a post-splicing multiprotein complex involved in both mRNA nuclear export and mRNA surveillance located in the perinuclear area interacts with translation release factors and the proteins that are functional homologs of yeast Upf1p and Upf3p
Synonyms:UPF2,g17625.t1
Chromosome:chromosome 17

Protein Localization

We did not create a plasmid for this gene.

Protein-Protein Interactions

We did not determine any protein-protein interactions for this gene.

Mutant Strains

Insertion Junction Mutant Strain Insertion Junction Feature Confidence (%) Genome Version
CLIP2.010079_1 CLIP2.010079 intron 80 6.1
CLIP2.010079_2 CLIP2.010079 intron 80 6.1
CLIP2.018785_1 CLIP2.018785 intron 80 6.1
CLIP2.018785_2 CLIP2.018785 intron 80 6.1
CLIP2.024032_3 CLIP2.024032 intron 80 6.1
CLIP2.037979_1 CLIP2.037979 intron 80 6.1
CLIP2.037979_2 CLIP2.037979 intron 80 6.1
CLIP2.042981_1 CLIP2.042981 CDS 80 6.1
CLIP2.042981_2 CLIP2.042981 CDS 80 6.1
CLIP2.053406_1 CLIP2.053406 intron 80 6.1
CLIP2.053406_2 CLIP2.053406 intron 80 6.1
CLIP2.070199_2 CLIP2.070199 intron 80 6.1
LMJ.RY0402.052031_1 LMJ.RY0402.052031 intron 73 5.5
LMJ.RY0402.055040_5 LMJ.RY0402.055040 CDS 73 5.5
LMJ.RY0402.060044_1 LMJ.RY0402.060044 intron 73 5.5
LMJ.RY0402.083555_2 LMJ.RY0402.083555 CDS 95 5.5
LMJ.RY0402.083555_3 LMJ.RY0402.083555 intron 95 5.5
LMJ.RY0402.085325_1 LMJ.RY0402.085325 intron 73 5.5
LMJ.RY0402.099217_1 LMJ.RY0402.099217 intron 73 5.5
LMJ.RY0402.102240_2 LMJ.RY0402.102240 intron 95 5.5
LMJ.RY0402.102240_3 LMJ.RY0402.102240 intron 95 5.5
LMJ.RY0402.138350_1 LMJ.RY0402.138350 intron 73 5.5
LMJ.RY0402.173141_1 LMJ.RY0402.173141 intron 73 5.5
LMJ.RY0402.182734_2 LMJ.RY0402.182734 intron 95 5.5
LMJ.RY0402.182734_3 LMJ.RY0402.182734 intron 95 5.5
LMJ.RY0402.182734_4 LMJ.RY0402.182734 intron 95 5.5
LMJ.RY0402.197793_1 LMJ.RY0402.197793 intron 95 5.5
LMJ.RY0402.197793_2 LMJ.RY0402.197793 intron 95 5.5
LMJ.RY0402.209685_1 LMJ.RY0402.209685 CDS 58 5.5
LMJ.RY0402.230281_6 LMJ.RY0402.230281 CDS 73 5.5
LMJ.RY0402.234642_1 LMJ.RY0402.234642 intron 95 5.5
LMJ.RY0402.234642_2 LMJ.RY0402.234642 intron 95 5.5
LMJ.RY0402.234642_3 LMJ.RY0402.234642 intron 95 5.5

Gene Annotations

PFAM:PF02854, PF04050
PANTHER: PTHR12839
KEGG_ec:
KEGG_orthology:K14327
KOG:KOG2051
Gene ontology terms::GO:0003723, GO:0005488, GO:0005515
Best arabidopsis TAIR name:AT2G39260
Best arabidopsis TAIR symbol:
Best arabidopsis TAIR defline:binding;RNA binding
Phytozome Locus Page

Phenotypes

Mutants in this gene exhibit a phenotype under the following conditions:

LAT027E04, screen 1 of 1 ( 98% confidence (FDR = 0.017))

Note: FDR indicates the likelihood that a particular genotype-phenotype relationship is incorrect. Not all mutants in a particular gene show the same phenotype. Please see the mutant pages for each mutant's phenotypes. Complementation is needed to definitively prove a genotype-phenotype link. These data are from a pooled phenotyping experiment.

If you reference the phenotypic data above in a manuscript, please cite: Fauser et al. 2022 Nature Genetics.