Gene: Cre03.g173800
Overview
| Common name: | PDXK1,SOS4,PDX2 |
| Defline: | (1 of 1) 2.7.1.35 - Pyridoxal kinase / Vitamin B6 kinase; Pyridoxal kinase |
| Description: | Involved in vitamin B6 biosynthesis; similar to putative ethylene-inducible protein; Orthologous to Arabidopsis AtSOS4 |
| Synonyms: | PDX2,PDXK1,g3584.t1,Cre03.g173800.t1.1,SOS4 |
| Chromosome: | chromosome 3 |
Protein Localization
A plasmid for expressing Cre03.g173800 tagged with the fluorescent protein Venus and affinity epitope 3xFLAG is available: pLM005-Cre03.g173800-Venus-3xFLAG
Imaged strain: CSI_LW06A9
Imaging conditions: Tris-Phosphate media, air, 150 uM photons/m2/s, shaking in 96-well plate; imaged after 16 hours.
Classification(s):
chloroplast/homogeneous/pyrenoid depleted
cytosol/cytosol (strong signal)
nucleus/nucleoplasm
nucleus/nucleolus
(with enriched signal in nucleoplasm)
If you reference these protein localization data in a manuscript, please cite: Wang et al. 2023.
 |  |  |  |
| Venus | Chlorophyll | Bright field | Merged |
Protein-Protein Interactions
We did not determine any protein-protein interactions for this gene.
Mutant Strains
| Insertion Junction | Mutant Strain | Insertion Junction Feature | Confidence (%) | Genome Version |
|---|---|---|---|---|
| CLIP2.003501_1 | CLIP2.003501 | intron | 80 | 6.1 |
| CLIP2.003501_2 | CLIP2.003501 | intron | 80 | 6.1 |
| CLIP2.003586_1 | CLIP2.003586 | 3'UTR | 80 | 6.1 |
| CLIP2.003586_2 | CLIP2.003586 | 3'UTR | 80 | 6.1 |
| CLIP2.003895_1 | CLIP2.003895 | intron | 63 | 6.1 |
| CLIP2.005589_1 | CLIP2.005589 | CDS | 80 | 6.1 |
| CLIP2.005895_1 | CLIP2.005895 | intron | 80 | 6.1 |
| LMJ.RY0402.058040_1 | LMJ.RY0402.058040 | 3'UTR | 95 | 5.5 |
| LMJ.RY0402.058040_2 | LMJ.RY0402.058040 | 3'UTR | 95 | 5.5 |
| LMJ.RY0402.126750_1 | LMJ.RY0402.126750 | 3'UTR | 95 | 5.5 |
| LMJ.RY0402.126750_2 | LMJ.RY0402.126750 | 3'UTR | 95 | 5.5 |
| LMJ.RY0402.203771_1 | LMJ.RY0402.203771 | intron | 95 | 5.5 |
| LMJ.RY0402.203771_2 | LMJ.RY0402.203771 | intron | 95 | 5.5 |
Gene Annotations
| PFAM: | PF08543 |
| PANTHER: | PTHR10534 PTHR10534:SF2 |
| KEGG_ec: | EC:2.7.1.35 |
| KEGG_orthology: | K00868 |
| KOG: | KOG2599 |
| Gene ontology terms:: | GO:0008478, GO:0009443 |
| Best arabidopsis TAIR name: | AT5G37850 |
| Best arabidopsis TAIR symbol: | ATSOS4,SOS4 |
| Best arabidopsis TAIR defline: | pfkB-like carbohydrate kinase family protein |
| Phytozome Locus Page |
Phenotypes
Our phenotype screens did not find statistically significant results for this gene.