Gene: Cre04.g225900
Overview
| Common name: | VAM2,VAMP72,VAMP2 |
| Defline: | Endosomal R-SNARE protein, Vamp7/Nyv1-family (R.III); (1 of 1) PTHR21136//PTHR21136:SF73 - SNARE PROTEINS // SUBFAMILY NOT NAMED |
| Description: | Expressed Protein, similar to VAMP7 R-SNAREs, involved in Golgi/PM and Golgi/endosomal trafficking; most similar to VAMP72-family of land plants; part of a 4-member gene family in Chlamydomonas all on same scaffold and in 2 tandem pairs, location and order of gene family members are syntenic in Volvox |
| Synonyms: | VAMP72,Cre04.g225900.t1.1,VAM2,g4938.t1 |
| Chromosome: | chromosome 4 |
Protein Localization
A plasmid for expressing Cre04.g225900 tagged with the fluorescent protein Venus and affinity epitope 3xFLAG is available: pLM005-Cre04.g225900-Venus-3xFLAG
Imaged strain: CSI_LW02E5
Imaging conditions: Tris-Phosphate media, air, 150 uM photons/m2/s, shaking in 96-well plate; imaged after 16 hours.
Classification(s):
secretory pathway/endosome
If you reference these protein localization data in a manuscript, please cite: Wang et al. 2023.
 |  |  |  |
| Venus | Chlorophyll | Bright field | Merged |
Protein-Protein Interactions
We did not determine any protein-protein interactions for this gene.
Mutant Strains
| Insertion Junction | Mutant Strain | Insertion Junction Feature | Confidence (%) | Genome Version |
|---|---|---|---|---|
| CLIP2.021577_1 | CLIP2.021577 | intron | 80 | 6.1 |
| CLIP2.021577_2 | CLIP2.021577 | intron | 80 | 6.1 |
| CLIP2.032246_1 | CLIP2.032246 | intron | 80 | 6.1 |
| CLIP2.032246_2 | CLIP2.032246 | intron | 80 | 6.1 |
| CLIP2.036263_1 | CLIP2.036263 | intron | 80 | 6.1 |
| CLIP2.036263_2 | CLIP2.036263 | intron | 80 | 6.1 |
| CLIP2.037218_1 | CLIP2.037218 | intron | 80 | 6.1 |
| CLIP2.037218_2 | CLIP2.037218 | intron | 80 | 6.1 |
| CLIP2.048232_1 | CLIP2.048232 | intron | 80 | 6.1 |
| CLIP2.054186_1 | CLIP2.054186 | intron | 80 | 6.1 |
| LMJ.RY0402.123882_1 | LMJ.RY0402.123882 | 5'UTR | 73 | 5.5 |
| LMJ.RY0402.123999_1 | LMJ.RY0402.123999 | 3'UTR | 58 | 5.5 |
| LMJ.RY0402.123999_2 | LMJ.RY0402.123999 | 3'UTR | 58 | 5.5 |
Gene Annotations
| PFAM: | PF00957, PF13774 |
| PANTHER: | PTHR21136 PTHR21136:SF73 |
| KEGG_ec: | |
| KEGG_orthology: | K08511 |
| KOG: | KOG0859 |
| Gene ontology terms:: | GO:0006810, GO:0016021, GO:0016192 |
| Best arabidopsis TAIR name: | AT2G32670 |
| Best arabidopsis TAIR symbol: | ATVAMP727,VAMP727 |
| Best arabidopsis TAIR defline: | vesicle-associated membrane protein 725 |
| Phytozome Locus Page |
Phenotypes
Our phenotype screens did not find statistically significant results for this gene.