Gene: Cre05.g237400
Overview
| Common name: | DAE1 |
| Defline: | (1 of 1) 5.1.1.7 - Diaminopimelate epimerase; Diaminopimelate epimerase |
| Description: | EC:5.1.1.7; lysine biosynthesis pathway (dapF); plastid location expected based on homology |
| Synonyms: | Cre05.g237400.t1.1,DAE1,g5461.t1 |
| Chromosome: | chromosome 5 |
Protein Localization
A plasmid for expressing Cre05.g237400 tagged with the fluorescent protein Venus and affinity epitope 3xFLAG is available: pLM005-Cre05.g237400-Venus-3xFLAG
Imaged strain: CSI_LW05D1
Imaging conditions: Tris-Phosphate media, air, 150 uM photons/m2/s, shaking in 96-well plate; imaged after 16 hours.
Classification(s):
chloroplast/homogeneous/pyrenoid depleted
shapes in cytoplasm/uncategorized shapes in cytoplasm
If you reference these protein localization data in a manuscript, please cite: Wang et al. 2023.
 |  |  |  |
| Venus | Chlorophyll | Bright field | Merged |
Protein-Protein Interactions
We did not determine any protein-protein interactions for this gene.
Mutant Strains
| Insertion Junction | Mutant Strain | Insertion Junction Feature | Confidence (%) | Genome Version |
|---|---|---|---|---|
| CLIP2.001779_1 | CLIP2.001779 | intron | 80 | 6.1 |
| CLIP2.001779_2 | CLIP2.001779 | intron | 80 | 6.1 |
| CLIP2.005788_1 | CLIP2.005788 | 3'UTR | 80 | 6.1 |
| CLIP2.005788_2 | CLIP2.005788 | 3'UTR | 80 | 6.1 |
| CLIP2.005884_1 | CLIP2.005884 | 3'UTR | 80 | 6.1 |
| LMJ.RY0402.157387_1 | LMJ.RY0402.157387 | 3'UTR | 73 | 5.5 |
| LMJ.RY0402.157501_1 | LMJ.RY0402.157501 | 5'UTR | 73 | 5.5 |
Gene Annotations
| PFAM: | PF01678 |
| PANTHER: | PTHR31689 PTHR31689:SF0 |
| KEGG_ec: | EC:5.1.1.7 |
| KEGG_orthology: | K01778 |
| KOG: | |
| Gene ontology terms:: | GO:0008837, GO:0009089 |
| Best arabidopsis TAIR name: | AT3G53580 |
| Best arabidopsis TAIR symbol: | |
| Best arabidopsis TAIR defline: | diaminopimelate epimerase family protein |
| Phytozome Locus Page |
Phenotypes
Our phenotype screens did not find statistically significant results for this gene.