Gene: Cre06.g281050

Overview

Common name:	VPS5A
Defline:	(1 of 2) K17917 - sorting nexin-1/2 (SNX1_2); Subunit of Retromer complex
Description:	Expressed Protein. Similar to VPS5/SNX1, component of Retromer Coat complex involved in endosomal to Golgi trafficking.
Synonyms:	Cre06.g281050.t1.1,g6536.t1,VPS5A
Chromosome:	chromosome 6

Protein Localization

We did not create a plasmid for this gene.

Protein-Protein Interactions

We did not determine any protein-protein interactions for this gene.

Mutant Strains

Insertion Junction	Mutant Strain	Insertion Junction Feature	Confidence (%)	Genome Version
CLIP2.008835_1	CLIP2.008835	intron	80	6.1
CLIP2.008835_2	CLIP2.008835	intron	80	6.1
CLIP2.019243_1	CLIP2.019243	intron	80	6.1
CLIP2.019243_2	CLIP2.019243	intron	80	6.1
CLIP2.024995_1	CLIP2.024995	intron	80	6.1
CLIP2.024995_2	CLIP2.024995	intron	80	6.1
CLIP2.036409_1	CLIP2.036409	intron	80	6.1
CLIP2.036409_2	CLIP2.036409	intron	80	6.1
CLIP2.043682_1	CLIP2.043682	intron	80	6.1
CLIP2.043682_2	CLIP2.043682	intron	80	6.1
LMJ.RY0402.056862_1	LMJ.RY0402.056862	CDS	95	5.5
LMJ.RY0402.056862_2	LMJ.RY0402.056862	intron	95	5.5
LMJ.RY0402.070304_1	LMJ.RY0402.070304	5'UTR	58	5.5
LMJ.RY0402.078881_1	LMJ.RY0402.078881	CDS	58	5.5
LMJ.RY0402.114517_1	LMJ.RY0402.114517	CDS	95	5.5
LMJ.RY0402.114517_2	LMJ.RY0402.114517	CDS	95	5.5
LMJ.RY0402.182107_3	LMJ.RY0402.182107	5'UTR	58	5.5
LMJ.RY0402.203656_1	LMJ.RY0402.203656	CDS	95	5.5
LMJ.RY0402.203656_2	LMJ.RY0402.203656	CDS/intron	95	5.5
LMJ.RY0402.253397_1	LMJ.RY0402.253397	intron	95	5.5
LMJ.RY0402.253397_2	LMJ.RY0402.253397	intron	95	5.5

Gene Annotations

PFAM:	PF00787, PF09325
PANTHER:	PTHR10555 PTHR10555:SF84
KEGG_ec:
KEGG_orthology:	K17917
KOG:	KOG2273
Gene ontology terms::	GO:0035091
Best arabidopsis TAIR name:	AT5G06140
Best arabidopsis TAIR symbol:	ATSNX1,SNX1
Best arabidopsis TAIR defline:	sorting nexin 1
Phytozome Locus Page

Phenotypes

Our phenotype screens did not find statistically significant results for this gene.