| Common name: | ROC93 |
| Defline: | (1 of 3) K06236 - collagen, type I/II/III/V/XI/XXIV/XXVII, alpha (COL1AS) |
| Description: | Transcription elongation factor homolog; Matsuo et al.'s (2008) roc93 (rhythm of chloroplast 93) circadian bioluminescence rhythm mutant locus maps here |
| Synonyms: | ROC93,g6780.t1 |
| Chromosome: | chromosome 6 |
We did not create a plasmid for this gene.
We did not determine any protein-protein interactions for this gene.
| Insertion Junction | Mutant Strain | Insertion Junction Feature | Confidence (%) | Genome Version |
|---|---|---|---|---|
| CLIP2.021126_1 | CLIP2.021126 | CDS | 80 | 6.1 |
| CLIP2.032215_1 | CLIP2.032215 | CDS | 80 | 6.1 |
| CLIP2.032215_2 | CLIP2.032215 | CDS | 80 | 6.1 |
| CLIP2.038772_1 | CLIP2.038772 | CDS | 80 | 6.1 |
| CLIP2.038772_2 | CLIP2.038772 | CDS | 80 | 6.1 |
| CLIP2.058568_1 | CLIP2.058568 | 3'UTR | 80 | 6.1 |
| CLIP2.058568_2 | CLIP2.058568 | 3'UTR | 80 | 6.1 |
| CLIP2.061589_1 | CLIP2.061589 | 5'UTR_intron | 80 | 6.1 |
| CLIP2.063509_1 | CLIP2.063509 | 3'UTR | 80 | 6.1 |
| CLIP2.063509_2 | CLIP2.063509 | 3'UTR | 80 | 6.1 |
| CLIP2.078754_1 | CLIP2.078754 | 3'UTR | 80 | 6.1 |
| CLIP2.078754_2 | CLIP2.078754 | 3'UTR | 80 | 6.1 |
| CLIP2.079396_1 | CLIP2.079396 | 5'UTR_intron | 80 | 6.1 |
| LMJ.RY0402.063293_1 | LMJ.RY0402.063293 | 3'UTR | 95 | 5.5 |
| LMJ.RY0402.063293_2 | LMJ.RY0402.063293 | 3'UTR | 95 | 5.5 |
| LMJ.RY0402.068897_1 | LMJ.RY0402.068897 | 3'UTR | 73 | 5.5 |
| LMJ.RY0402.197580_1 | LMJ.RY0402.197580 | 3'UTR | 58 | 5.5 |
| LMJ.RY0402.198600_3 | LMJ.RY0402.198600 | 3'UTR | 95 | 5.5 |
| LMJ.RY0402.198600_4 | LMJ.RY0402.198600 | 3'UTR | 95 | 5.5 |
| PFAM: | PF08711 |
| PANTHER: | |
| KEGG_ec: | |
| KEGG_orthology: | |
| KOG: | |
| Gene ontology terms:: | GO:0003677, GO:0005634, GO:0006351, GO:0046872 |
| Best arabidopsis TAIR name: | AT3G48060.1 |
| Best arabidopsis TAIR symbol: | |
| Best arabidopsis TAIR defline: | BAH domain ;TFIIS helical bundle-like domain |
| Phytozome Locus Page |
Our phenotype screens did not find statistically significant results for this gene.