Gene: Cre07.g329150

Overview

Common name:SPL21,SPLH1
Defline:DEAH-box helicase, possible nuclear pre-mRNA splicing factor, N-terminal; (1 of 3) K12818 - ATP-dependent RNA helicase DHX8/PRP22 (DHX8, PRP22)
Description:DEAH-box ATPase, putative RNA helicase, homologue of S. cerevisiae mRNA splicing helicases Prp2, Prp16, Prp22 and Prp43 which are required at different steps of the spliceosome cycle; gene appears split, possibly a pseudogene
Synonyms:g7654.t1,Cre07.g329150.t1.1,SPL21,SPLH1
Chromosome:chromosome 7

Protein Localization

We did not create a plasmid for this gene.

Protein-Protein Interactions

We did not determine any protein-protein interactions for this gene.

Mutant Strains

Insertion Junction Mutant Strain Insertion Junction Feature Confidence (%) Genome Version
CLIP2.001150_1 CLIP2.001150 intron 80 6.1
CLIP2.001150_2 CLIP2.001150 intron 80 6.1
CLIP2.001389_1 CLIP2.001389 intron 80 6.1
CLIP2.001389_2 CLIP2.001389 intron 40 6.1
CLIP2.001871_1 CLIP2.001871 intron 80 6.1
CLIP2.003935_1 CLIP2.003935 intron 80 6.1
CLIP2.003935_2 CLIP2.003935 intron 80 6.1
CLIP2.004186_1 CLIP2.004186 intron 40 6.1
CLIP2.005853_1 CLIP2.005853 intron 80 6.1
CLIP2.006887_2 CLIP2.006887 intron 40 6.1
CLIP2.007601_1 CLIP2.007601 intron 63 6.1
LMJ.RY0402.079631_1 LMJ.RY0402.079631 intron 73 5.5
LMJ.RY0402.097484_1 LMJ.RY0402.097484 intron 95 5.5
LMJ.RY0402.097484_2 LMJ.RY0402.097484 intron 95 5.5
LMJ.RY0402.117239_1 LMJ.RY0402.117239 intron 95 5.5
LMJ.RY0402.117239_2 LMJ.RY0402.117239 intron 95 5.5
LMJ.RY0402.119979_1 LMJ.RY0402.119979 intron 73 5.5
LMJ.RY0402.141230_1 LMJ.RY0402.141230 intron 58 5.5
LMJ.RY0402.141230_2 LMJ.RY0402.141230 intron 58 5.5
LMJ.RY0402.176510_1 LMJ.RY0402.176510 intron 58 5.5
LMJ.RY0402.176510_2 LMJ.RY0402.176510 CDS 58 5.5

Gene Annotations

PFAM:PF00270, PF00271, PF04408, PF07717
PANTHER: PTHR18934 PTHR18934:SF143
KEGG_ec:EC:3.6.4.13
KEGG_orthology:K12818
KOG:KOG0922
Gene ontology terms::GO:0003676, GO:0004386, GO:0005524
Best arabidopsis TAIR name:AT1G26370
Best arabidopsis TAIR symbol:EMB3011
Best arabidopsis TAIR defline:RNA helicase family protein
Phytozome Locus Page

Phenotypes

Mutants in this gene exhibit a phenotype under the following conditions:

Paromomycin, screen 5 of 6 ( 74% confidence (FDR = 0.26))

Note: FDR indicates the likelihood that a particular genotype-phenotype relationship is incorrect. Not all mutants in a particular gene show the same phenotype. Please see the mutant pages for each mutant's phenotypes. Complementation is needed to definitively prove a genotype-phenotype link. These data are from a pooled phenotyping experiment.

If you reference the phenotypic data above in a manuscript, please cite: Fauser et al. 2022 Nature Genetics.