Gene: Cre07.g346050
Overview
| Common name: | CRD1,CHL27A |
| Defline: | Copper response defect 1 protein; (1 of 2) 1.14.13.81 - Magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase / Mg-protoporphyrin IX monomethyl ester oxidative cyclase |
| Description: | Mg-protoporphyrin IX monomethyl ester (oxidative) cyclase, aerobic oxidative cyclase membrane subunit; Copper response defect 1 protein, chloroplast precursor; Produced under copper and/or oxygen deficient conditions [GI:7542488; PMID: 119113; PMID: 181165; PMID: 119113; PMID: 1467313]; orthologous to Rubrivax gelatinosus aerobic oxidative cyclase [PMID: 11790744; PMID: 14617630]; Predicted chloroplast transit peptide 1-34; Orthologous to CTH1; CHL27B [PMID: 15849308]; Target of CRR1 |
| Synonyms: | CHL27A,CRD1,g8051.t2 |
| Chromosome: | chromosome 7 |
Protein Localization
A plasmid for expressing Cre07.g346050 tagged with the fluorescent protein Venus and affinity epitope 3xFLAG is available: pLM005-Cre07.g346050-Venus-3xFLAG
Imaged strain: CSI_LW06A7
Imaging conditions: Tris-Phosphate media, air, 150 uM photons/m2/s, shaking in 96-well plate; imaged after 16 hours.
Classification(s):
chloroplast/homogeneous/pyrenoid depleted
shapes in cytoplasm/a few small patches in cytoplasm
If you reference these protein localization data in a manuscript, please cite: Wang et al. 2023.
 |  |  |  |
| Venus | Chlorophyll | Bright field | Merged |
Protein-Protein Interactions
We did not determine any protein-protein interactions for this gene.
Mutant Strains
| Insertion Junction | Mutant Strain | Insertion Junction Feature | Confidence (%) | Genome Version |
|---|---|---|---|---|
| CLIP2.001100_1 | CLIP2.001100 | CDS | 80 | 6.1 |
| CLIP2.001100_2 | CLIP2.001100 | CDS | 80 | 6.1 |
| CLIP2.004396_1 | CLIP2.004396 | 3'UTR | 80 | 6.1 |
| CLIP2.005041_1 | CLIP2.005041 | 3'UTR | 80 | 6.1 |
| CLIP2.005144_2 | CLIP2.005144 | 3'UTR | 63 | 6.1 |
| CLIP2.005739_1 | CLIP2.005739 | 3'UTR | 80 | 6.1 |
| CLIP2.006534_2 | CLIP2.006534 | CDS | 40 | 6.1 |
| CLIP2.007081_1 | CLIP2.007081 | intron | 80 | 6.1 |
| LMJ.RY0402.066313_2 | LMJ.RY0402.066313 | 5'UTR|5'UTR_intron | 58 | 5.5 |
| LMJ.RY0402.137245_1 | LMJ.RY0402.137245 | 3'UTR | 95 | 5.5 |
| LMJ.RY0402.137245_2 | LMJ.RY0402.137245 | 3'UTR | 95 | 5.5 |
| LMJ.RY0402.164856_1 | LMJ.RY0402.164856 | CDS | 95 | 5.5 |
| LMJ.RY0402.164856_2 | LMJ.RY0402.164856 | CDS | 95 | 5.5 |
| LMJ.RY0402.214720_1 | LMJ.RY0402.214720 | 5'UTR|outside_mRNA | 95 | 5.5 |
| LMJ.RY0402.214720_2 | LMJ.RY0402.214720 | 5'UTR|outside_mRNA | 95 | 5.5 |
Gene Annotations
| PFAM: | PF02915 |
| PANTHER: | PTHR31053 PTHR31053:SF2 |
| KEGG_ec: | EC:1.14.13.81 |
| KEGG_orthology: | K04035 |
| KOG: | |
| Gene ontology terms:: | GO:0015979, GO:0015995, GO:0016491, GO:0046872, GO:0048529, GO:0055114 |
| Best arabidopsis TAIR name: | AT3G56940 |
| Best arabidopsis TAIR symbol: | ACSF,CHL27,CRD1 |
| Best arabidopsis TAIR defline: | dicarboxylate diiron protein, putative (Crd1) |
| Phytozome Locus Page |
Phenotypes
Mutants in this gene exhibit a phenotype under the following conditions:
| Hypoxic (low light), screen 1 of 1 ( 95% confidence (FDR = 0.041)) |
Note: FDR indicates the likelihood that a particular genotype-phenotype relationship is incorrect. Not all mutants in a particular gene show the same phenotype. Please see the mutant pages for each mutant's phenotypes. Complementation is needed to definitively prove a genotype-phenotype link. These data are from a pooled phenotyping experiment.
If you reference the phenotypic data above in a manuscript, please cite: Fauser et al. 2022 Nature Genetics.