Gene: Cre09.g402219
Overview
| Common name: | LCI3 |
| Defline: | Low-CO2-inducible protein |
| Description: | Regulated by CCM1 [PMID: 15235119]. Acclimation to changing CO2 concentrations and light intensities was studied by Yamano et al. 2008 [PMID: 18322145]. |
| Synonyms: | g10012.t2,Cre02.g139950.t2.1,LCI3 |
| Chromosome: | chromosome 9 |
Protein Localization
The plasmid for this gene is not available.
Imaged strain: CSI_FC1F04
Imaging conditions: Tris-Phosphate media, air, 150 uM photons/m2/s, shaking in 96-well plate; imaged after 48 hours.
Classification(s):
secretory pathway/endoplasmic reticulum
If you reference these protein localization data in a manuscript, please cite: Mackinder et al. 2017.
 |
| Venus Venus+Chlorophyll |
Protein-Protein Interactions
We did not determine any protein-protein interactions for this gene.
Mutant Strains
| Insertion Junction | Mutant Strain | Insertion Junction Feature | Confidence (%) | Genome Version |
|---|---|---|---|---|
| CLIP2.016136_1 | CLIP2.016136 | intron | 80 | 6.1 |
| CLIP2.024329_1 | CLIP2.024329 | intron | 80 | 6.1 |
| CLIP2.024329_2 | CLIP2.024329 | intron | 80 | 6.1 |
| CLIP2.034399_1 | CLIP2.034399 | intron | 80 | 6.1 |
| CLIP2.034399_2 | CLIP2.034399 | intron | 80 | 6.1 |
| CLIP2.050360_1 | CLIP2.050360 | intron | 80 | 6.1 |
| LMJ.RY0402.041841_1 | LMJ.RY0402.041841 | intron | 95 | 5.5 |
| LMJ.RY0402.041841_2 | LMJ.RY0402.041841 | intron | 95 | 5.5 |
| LMJ.RY0402.074357_2 | LMJ.RY0402.074357 | CDS | 58 | 5.5 |
| LMJ.RY0402.099439_2 | LMJ.RY0402.099439 | 5'UTR|outside_mRNA | 95 | 5.5 |
| LMJ.RY0402.104596_1 | LMJ.RY0402.104596 | 5'UTR|outside_mRNA | 73 | 5.5 |
| LMJ.RY0402.128170_1 | LMJ.RY0402.128170 | 3'UTR | 73 | 5.5 |
| LMJ.RY0402.134413_1 | LMJ.RY0402.134413 | intron | 58 | 5.5 |
| LMJ.RY0402.240206_1 | LMJ.RY0402.240206 | 3'UTR | 73 | 5.5 |
Gene Annotations
| PFAM: | |
| PANTHER: | |
| KEGG_ec: | |
| KEGG_orthology: | |
| KOG: | |
| Gene ontology terms:: | |
| Best arabidopsis TAIR name: | |
| Best arabidopsis TAIR symbol: | |
| Best arabidopsis TAIR defline: | |
| Phytozome Locus Page |
Phenotypes
Mutants in this gene exhibit a phenotype under the following conditions:
| Paromomycin, screen 1 of 6 ( 79% confidence (FDR = 0.21)) |
| Paromomycin, screen 2 of 6 ( 74% confidence (FDR = 0.26)) |
| Paromomycin, screen 4 of 6 ( 82% confidence (FDR = 0.18)) |
Note: FDR indicates the likelihood that a particular genotype-phenotype relationship is incorrect. Not all mutants in a particular gene show the same phenotype. Please see the mutant pages for each mutant's phenotypes. Complementation is needed to definitively prove a genotype-phenotype link. These data are from a pooled phenotyping experiment.
If you reference the phenotypic data above in a manuscript, please cite: Fauser et al. 2022 Nature Genetics.