Gene: Cre12.g513700
Overview
| Common name: | HEL52 |
| Defline: | DEAD box ATP-dependent RNA helicase; (1 of 1) K14808 - ATP-dependent RNA helicase DDX54/DBP10 [EC:3.6.4.13] (DDX54, DBP10) |
| Description: | |
| Synonyms: | g12681.t1,HEL52 |
| Chromosome: | chromosome 12 |
Protein Localization
A plasmid for expressing Cre12.g513700 tagged with the fluorescent protein Venus and affinity epitope 3xFLAG is available: pLM005-Cre12.g513700-Venus-3xFLAG
Imaged strain: CSI_LW05A6
Imaging conditions: Tris-Phosphate media, air, 150 uM photons/m2/s, shaking in 96-well plate; imaged after 16 hours.
Classification(s):
chloroplast/homogeneous/pyrenoid depleted
If you reference these protein localization data in a manuscript, please cite: Wang et al. 2023.
 |  |  |  |
| Venus | Chlorophyll | Bright field | Merged |
Protein-Protein Interactions
We did not determine any protein-protein interactions for this gene.
Mutant Strains
| Insertion Junction | Mutant Strain | Insertion Junction Feature | Confidence (%) | Genome Version |
|---|---|---|---|---|
| CLIP2.002023_1 | CLIP2.002023 | outside_mRNA | 80 | 6.1 |
| CLIP2.003013_1 | CLIP2.003013 | intron | 80 | 6.1 |
| CLIP2.003013_2 | CLIP2.003013 | intron | 80 | 6.1 |
| CLIP2.004386_1 | CLIP2.004386 | intron | 80 | 6.1 |
| CLIP2.004386_2 | CLIP2.004386 | intron | 80 | 6.1 |
| CLIP2.005124_1 | CLIP2.005124 | intron | 80 | 6.1 |
| CLIP2.005124_2 | CLIP2.005124 | intron | 80 | 6.1 |
| CLIP2.005437_1 | CLIP2.005437 | outside_mRNA | 80 | 6.1 |
| CLIP2.005437_2 | CLIP2.005437 | outside_mRNA | 80 | 6.1 |
| CLIP2.007295_1 | CLIP2.007295 | intron | 80 | 6.1 |
| CLIP2.007404_1 | CLIP2.007404 | intron | 80 | 6.1 |
| LMJ.RY0402.212903_1 | LMJ.RY0402.212903 | 3'UTR | 95 | 5.5 |
| LMJ.RY0402.212903_2 | LMJ.RY0402.212903 | 3'UTR | 95 | 5.5 |
| LMJ.RY0402.230333_1 | LMJ.RY0402.230333 | 5'UTR | 58 | 5.5 |
Gene Annotations
| PFAM: | PF00271, PF04851, PF08147 |
| PANTHER: | PTHR24031 PTHR24031:SF292 |
| KEGG_ec: | EC:3.6.4.13 |
| KEGG_orthology: | K14808 |
| KOG: | |
| Gene ontology terms:: | GO:0003677, GO:0003723, GO:0005488, GO:0005524, GO:0005634, GO:0016787, GO:0016818 |
| Best arabidopsis TAIR name: | AT1G77030 |
| Best arabidopsis TAIR symbol: | |
| Best arabidopsis TAIR defline: | hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases |
| Phytozome Locus Page |
Phenotypes
Our phenotype screens did not find statistically significant results for this gene.