Gene: Cre13.g570550
Overview
| Common name: | CDD1 |
| Defline: | Cytidine deaminase; (1 of 1) 3.5.4.5 - Cytidine deaminase / Cytosine nucleoside deaminase |
| Description: | CMP/dCMP deaminase, zinc-binding; Cytidine aminohydrolase (CDA) |
| Synonyms: | Cre13.g570550.t1.1,g14034.t1 |
| Chromosome: | chromosome 13 |
Protein Localization
A plasmid for expressing Cre13.g570550 tagged with the fluorescent protein Venus and affinity epitope 3xFLAG is available: pLM005-Cre13.g570550-Venus-3xFLAG
Imaged strain: CSI_LW11A10
Imaging conditions: Tris-Phosphate media, air, 150 uM photons/m2/s, shaking in 96-well plate; imaged after 16 hours.
Classification(s):
chloroplast/homogeneous/pyrenoid depleted
shapes in cytoplasm/a few small puncta|vesicles in cytoplasm
If you reference these protein localization data in a manuscript, please cite: Wang et al. 2023.
 |  |  |  |
| Venus | Chlorophyll | Bright field | Merged |
Protein-Protein Interactions
We did not determine any protein-protein interactions for this gene.
Mutant Strains
| Insertion Junction | Mutant Strain | Insertion Junction Feature | Confidence (%) | Genome Version |
|---|---|---|---|---|
| CLIP2.002293_3 | CLIP2.002293 | 5'UTR | 80 | 6.1 |
| CLIP2.003137_1 | CLIP2.003137 | intron | 80 | 6.1 |
| CLIP2.003137_2 | CLIP2.003137 | intron | 80 | 6.1 |
| CLIP2.003782_1 | CLIP2.003782 | CDS | 80 | 6.1 |
| CLIP2.003782_2 | CLIP2.003782 | CDS | 80 | 6.1 |
| CLIP2.004956_1 | CLIP2.004956 | CDS | 80 | 6.1 |
| CLIP2.006063_1 | CLIP2.006063 | 3'UTR | 80 | 6.1 |
| CLIP2.007508_1 | CLIP2.007508 | intron | 63 | 6.1 |
| LMJ.RY0402.068123_1 | LMJ.RY0402.068123 | intron | 73 | 5.5 |
Gene Annotations
| PFAM: | PF00383, PF08211 |
| PANTHER: | PTHR11644 PTHR11644:SF2 |
| KEGG_ec: | EC:3.5.4.5 |
| KEGG_orthology: | K01489 |
| KOG: | KOG0833 |
| Gene ontology terms:: | GO:0003824, GO:0004126, GO:0008270, GO:0009972 |
| Best arabidopsis TAIR name: | AT2G19570 |
| Best arabidopsis TAIR symbol: | AT-CDA1,CDA1,DESZ |
| Best arabidopsis TAIR defline: | cytidine deaminase 1 |
| Phytozome Locus Page |
Phenotypes
Our phenotype screens did not find statistically significant results for this gene.