Gene: Cre16.g659050

Overview

Common name:
Defline:	(1 of 1) 4.2.99.20 - 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase / SHCHC synthase
Description:
Synonyms:	g15922.t1
Chromosome:	chromosome 16

Protein Localization

We did not create a plasmid for this gene.

Protein-Protein Interactions

We did not determine any protein-protein interactions for this gene.

Mutant Strains

Insertion Junction	Mutant Strain	Insertion Junction Feature	Confidence (%)	Genome Version
CLIP2.001803_1	CLIP2.001803	CDS	80	6.1
CLIP2.001803_2	CLIP2.001803	CDS	80	6.1
CLIP2.002474_1	CLIP2.002474	CDS	80	6.1
CLIP2.002474_2	CLIP2.002474	CDS	80	6.1
CLIP2.002580_1	CLIP2.002580	CDS	80	6.1
CLIP2.002580_2	CLIP2.002580	CDS	80	6.1
CLIP2.003552_1	CLIP2.003552	intron	80	6.1
CLIP2.003552_2	CLIP2.003552	intron	80	6.1
CLIP2.005711_1	CLIP2.005711	CDS	80	6.1
CLIP2.005711_2	CLIP2.005711	CDS	80	6.1
LMJ.RY0402.038499_2	LMJ.RY0402.038499	CDS	73	5.5
LMJ.RY0402.059921_1	LMJ.RY0402.059921	CDS	73	5.5
LMJ.RY0402.117156_1	LMJ.RY0402.117156	intron	73	5.5
LMJ.RY0402.160194_1	LMJ.RY0402.160194	3'UTR	73	5.5
LMJ.RY0402.179228_2	LMJ.RY0402.179228	intron	73	5.5
LMJ.RY0402.180921_1	LMJ.RY0402.180921	CDS	73	5.5
LMJ.RY0402.195537_1	LMJ.RY0402.195537	intron	58	5.5
LMJ.RY0402.202072_1	LMJ.RY0402.202072	3'UTR	58	5.5
LMJ.RY0402.213426_1	LMJ.RY0402.213426	intron	73	5.5
LMJ.RY0402.239408_1	LMJ.RY0402.239408	intron	95	5.5
LMJ.RY0402.239408_2	LMJ.RY0402.239408	intron	95	5.5
LMJ.RY0402.242599_1	LMJ.RY0402.242599	intron	73	5.5
LMJ.RY0402.243919_1	LMJ.RY0402.243919	CDS	95	5.5
LMJ.RY0402.243919_2	LMJ.RY0402.243919	CDS	95	5.5
LMJ.RY0402.246800_2	LMJ.RY0402.246800	intron	58	5.5
LMJ.RY0402.253552_1	LMJ.RY0402.253552	CDS	95	5.5
LMJ.RY0402.253552_2	LMJ.RY0402.253552	CDS	95	5.5

Gene Annotations

PFAM:	PF00425, PF00561, PF02776, PF13378
PANTHER:	PTHR18968 PTHR18968:SF114
KEGG_ec:	EC:2.2.1.9 EC:4.2.1.113 EC:4.2.99.20
KEGG_orthology:	K14759
KOG:
Gene ontology terms::	GO:0009058, GO:0009234, GO:0030976, GO:0070204
Best arabidopsis TAIR name:	AT1G68890
Best arabidopsis TAIR symbol:
Best arabidopsis TAIR defline:	magnesium ion binding;thiamin pyrophosphate binding;hydro-lyases;catalytics;2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthases
Phytozome Locus Page

Phenotypes

Mutants in this gene exhibit a phenotype under the following conditions:

LAT042C03, screen 1 of 1 ( 99% confidence (FDR = 0.0099))

Photosynthesis, screen 3 of 5 ( 81% confidence (FDR = 0.19))

Photosynthesis, screen 5 of 5 ( 92% confidence (FDR = 0.073))

Photosynthesis or light sensitivity, screen 1 of 12 ( 79% confidence (FDR = 0.21))

Photosynthesis or light sensitivity, screen 3 of 12 ( 97% confidence (FDR = 0.029))

Photosynthesis or light sensitivity, screen 4 of 12 ( 85% confidence (FDR = 0.15))

Photosynthesis or light sensitivity, screen 5 of 12 ( 98% confidence (FDR = 0.016))

Photosynthesis or light sensitivity, screen 9 of 12 ( 73% confidence (FDR = 0.27))

Zeocin, screen 1 of 5 ( 81% confidence (FDR = 0.19))

Note: FDR indicates the likelihood that a particular genotype-phenotype relationship is incorrect. Not all mutants in a particular gene show the same phenotype. Please see the mutant pages for each mutant's phenotypes. Complementation is needed to definitively prove a genotype-phenotype link. These data are from a pooled phenotyping experiment.

If you reference the phenotypic data above in a manuscript, please cite: Fauser et al. 2022 Nature Genetics.