Gene: Cre03.g185550
Overview
| Common name: | SEBP1,SBP1 |
| Defline: | (1 of 2) 3.1.3.37 - Sedoheptulose-bisphosphatase / Sedoheptulose-1,7-bisphosphatase; Sedoheptulose-1%252C7-bisphosphatase, chloroplastic |
| Description: | Calvin-Benson-Bassham cycle enzyme |
| Synonyms: | g3845.t1,Cre03.g185550.t1.1,SBP1,SEBP1 |
| Chromosome: | chromosome 3 |
Protein Localization
The plasmid for this gene is not available.
Imaged strain: CSI_LW02B2
Imaging conditions: Tris-Phosphate media, air, 150 uM photons/m2/s, shaking in 96-well plate; imaged after 16 hours.
Classification(s):
chloroplast/not homogeneous/pyrenoid depleted/enriched around pyrenoid
If you reference these protein localization data in a manuscript, please cite: Mackinder et al. 2017.
 |  |  |  |
| Chlorophyll | Chlorophyll | Bright field | Merged |
Protein-Protein Interactions
We did not determine any protein-protein interactions for this gene.
Mutant Strains
| Insertion Junction | Mutant Strain | Insertion Junction Feature | Confidence (%) | Genome Version |
|---|---|---|---|---|
| CLIP2.003434_1 | CLIP2.003434 | intron | 80 | 6.1 |
| CLIP2.004673_1 | CLIP2.004673 | CDS | 80 | 6.1 |
| CLIP2.004673_2 | CLIP2.004673 | CDS | 80 | 6.1 |
| CLIP2.005066_1 | CLIP2.005066 | 3'UTR | 80 | 6.1 |
| CLIP2.005066_2 | CLIP2.005066 | 3'UTR | 80 | 6.1 |
| CLIP2.005173_1 | CLIP2.005173 | intron | 80 | 6.1 |
| CLIP2.005173_2 | CLIP2.005173 | intron | 80 | 6.1 |
| CLIP2.005859_1 | CLIP2.005859 | intron | 80 | 6.1 |
| CLIP2.005859_2 | CLIP2.005859 | intron | 80 | 6.1 |
| CLIP2.005906_1 | CLIP2.005906 | 3'UTR | 80 | 6.1 |
| CLIP2.005906_2 | CLIP2.005906 | 3'UTR | 80 | 6.1 |
| CLIP2.072125_2 | CLIP2.072125 | intron | 63 | 6.1 |
| LMJ.RY0402.054764_1 | LMJ.RY0402.054764 | intron | 95 | 5.5 |
| LMJ.RY0402.054764_2 | LMJ.RY0402.054764 | intron | 95 | 5.5 |
| LMJ.RY0402.059490_1 | LMJ.RY0402.059490 | 3'UTR | 95 | 5.5 |
| LMJ.RY0402.059490_2 | LMJ.RY0402.059490 | 3'UTR | 95 | 5.5 |
| LMJ.RY0402.077047_1 | LMJ.RY0402.077047 | intron | 73 | 5.5 |
| LMJ.RY0402.152239_1 | LMJ.RY0402.152239 | CDS | 58 | 5.5 |
Gene Annotations
| PFAM: | PF00316 |
| PANTHER: | PTHR11556 PTHR11556:SF2 |
| KEGG_ec: | EC:3.1.3.37 |
| KEGG_orthology: | K01100 |
| KOG: | KOG1458 |
| Gene ontology terms:: | GO:0005975, GO:0042132, GO:0042578 |
| Best arabidopsis TAIR name: | AT3G55800 |
| Best arabidopsis TAIR symbol: | SBPASE |
| Best arabidopsis TAIR defline: | sedoheptulose-bisphosphatase |
| Phytozome Locus Page |
Phenotypes
Mutants in this gene exhibit a phenotype under the following conditions:
| Photosynthesis, screen 1 of 5 ( 78% confidence (FDR = 0.22)) |
| Photosynthesis, screen 3 of 5 ( 96% confidence (FDR = 0.04)) |
| Photosynthesis, screen 4 of 5 ( 86% confidence (FDR = 0.14)) |
| Photosynthesis, screen 5 of 5 ( 95% confidence (FDR = 0.049)) |
| Photosynthesis or light sensitivity, screen 3 of 12 ( 84% confidence (FDR = 0.16)) |
| Photosynthesis or light sensitivity, screen 7 of 12 ( 88% confidence (FDR = 0.12)) |
| Photosynthesis or light sensitivity, screen 8 of 12 ( 99% confidence (FDR = 0.0048)) |
| Photosynthesis or light sensitivity, screen 10 of 12 ( 89% confidence (FDR = 0.11)) |
| Photosynthesis or light sensitivity, screen 11 of 12 ( 99% confidence (FDR = 0.0083)) |
| Photosynthesis or light sensitivity, screen 12 of 12 ( 91% confidence (FDR = 0.085)) |
Note: FDR indicates the likelihood that a particular genotype-phenotype relationship is incorrect. Not all mutants in a particular gene show the same phenotype. Please see the mutant pages for each mutant's phenotypes. Complementation is needed to definitively prove a genotype-phenotype link. These data are from a pooled phenotyping experiment.
If you reference the phenotypic data above in a manuscript, please cite: Fauser et al. 2022 Nature Genetics.