Gene: Cre10.g444700

Overview

Common name:SBE3,SBE2b
Defline:(1 of 3) 2.4.1.18 - 1,4-alpha-glucan branching enzyme / Glycogen branching enzyme; Starch Branching Enzyme 3
Description:Catalyses the formation of alpha-1,6 linkages within the polymer by cleaving a preexisting linear chain and transferring the fragment at the non reducing end of the cleaved glucan to an alpha-1,6 position
Synonyms:SBE2b,g10933.t1
Chromosome:chromosome 10

Protein Localization

The plasmid for this gene is not available.

Imaged strain: CSI_FC1F11

Imaging conditions: Tris-Phosphate media, air, 150 uM photons/m2/s, shaking in 96-well plate; imaged after 48 hours.

Classification(s):

chloroplast/pyrenoid/pyrenoid periphery enriched

If you reference these protein localization data in a manuscript, please cite: Mackinder et al. 2017.

Venus                      Venus+Chlorophyll

Protein-Protein Interactions

Bait ID Bait Name Prey ID Prey Name Reference
Cre03.g191250 LCI34 Cre10.g444700 SBE3,SBE2b Mackinder et al. 2017
Cre09.g394473 LCI9 Cre10.g444700 SBE3,SBE2b Mackinder et al. 2017
Cre10.g444700 SBE3,SBE2b Cre02.g095126 DPE1,DPE2 Mackinder et al. 2017
Cre10.g444700 SBE3,SBE2b Cre06.g282000 SSIII,STA3,SSS3A,SSS3 Mackinder et al. 2017
Cre10.g444700 SBE3,SBE2b Cre10.g444700 SBE3,SBE2b Mackinder et al. 2017
Cre10.g444700 SBE3,SBE2b Cre14.g617450 HSP22E Mackinder et al. 2017

Mutant Strains

Insertion Junction Mutant Strain Insertion Junction Feature Confidence (%) Genome Version
CLIP2.000070_1 CLIP2.000070 intron 80 6.1
CLIP2.000070_2 CLIP2.000070 intron 80 6.1
CLIP2.000191_1 CLIP2.000191 CDS 80 6.1
CLIP2.000303_1 CLIP2.000303 intron 80 6.1
CLIP2.000303_2 CLIP2.000303 intron 80 6.1
CLIP2.000422_1 CLIP2.000422 CDS 80 6.1
CLIP2.000422_2 CLIP2.000422 CDS 80 6.1
CLIP2.000738_1 CLIP2.000738 intron 80 6.1
CLIP2.000786_1 CLIP2.000786 intron 80 6.1
CLIP2.001043_3 CLIP2.001043 intron 80 6.1
LMJ.RY0402.055695_1 LMJ.RY0402.055695 3'UTR 95 5.5
LMJ.RY0402.055695_2 LMJ.RY0402.055695 3'UTR 95 5.5
LMJ.RY0402.058754_2 LMJ.RY0402.058754 CDS 73 5.5
LMJ.RY0402.062125_2 LMJ.RY0402.062125 intron 73 5.5
LMJ.RY0402.063813_1 LMJ.RY0402.063813 3'UTR 73 5.5
LMJ.RY0402.071404_1 LMJ.RY0402.071404 CDS 73 5.5
LMJ.RY0402.072124_1 LMJ.RY0402.072124 intron 73 5.5
LMJ.RY0402.085840_1 LMJ.RY0402.085840 intron 73 5.5
LMJ.RY0402.110646_1 LMJ.RY0402.110646 intron 95 5.5
LMJ.RY0402.110646_2 LMJ.RY0402.110646 intron 95 5.5
LMJ.RY0402.131761_2 LMJ.RY0402.131761 CDS 73 5.5

Gene Annotations

PFAM:PF00128, PF02806, PF02922
PANTHER: PTHR10357 PTHR10357:SF141
KEGG_ec:EC:2.4.1.18
KEGG_orthology:K00700
KOG:KOG0470
Gene ontology terms::GO:0003824, GO:0004553, GO:0005975, GO:0043169
Best arabidopsis TAIR name:AT2G36390
Best arabidopsis TAIR symbol:SBE2.2
Best arabidopsis TAIR defline:starch branching enzyme 2.1
Phytozome Locus Page

Phenotypes

Mutants in this gene exhibit a phenotype under the following conditions:

Carbon concentrating mechanism, screen 1 of 11 ( 75% confidence (FDR = 0.25))
Carbon concentrating mechanism, screen 11 of 11 ( 71% confidence (FDR = 0.29))

Note: FDR indicates the likelihood that a particular genotype-phenotype relationship is incorrect. Not all mutants in a particular gene show the same phenotype. Please see the mutant pages for each mutant's phenotypes. Complementation is needed to definitively prove a genotype-phenotype link. These data are from a pooled phenotyping experiment.

If you reference the phenotypic data above in a manuscript, please cite: Fauser et al. 2022 Nature Genetics.