Gene: Cre10.g452800

Overview

Common name:LCIB1,PMP1,LCIB
Defline:Low-CO2-inducible protein B
Description:low-CO2 inducible protein; homologous to LCIC with which it forms a complex; regulated by CCM1; LCIB is indispensable for the CO2-concentrating mechanism especially under low-CO2 conditions; localization is diffuse in chloroplast stroma under high-CO2 and low-CO2 conditions, but aggregated around pyrenoid as ring-like structure under very low-CO2 conditions; LCIB expression is also detected under HC conditions; Mutations in this gene include pmp1 (Spalding et al., 1983 [PMID: 16663206]) and ad1 (Wang et al
Synonyms:g11120.t1,PMP1,LCIB,Cre10.g452800.t1.1
Chromosome:chromosome 10

Protein Localization

The plasmid for this gene is not available.

Imaged strain: CSI_FC1D04

Imaging conditions: Tris-Phosphate media, air, 150 uM photons/m2/s, shaking in 96-well plate; imaged after 48 hours.

Classification(s):

chloroplast/pyrenoid/pyrenoid periphery enriched

If you reference these protein localization data in a manuscript, please cite: Mackinder et al. 2017.

Venus                      Venus+Chlorophyll

Protein-Protein Interactions

Bait ID Bait Name Prey ID Prey Name Reference
Cre06.g307500 LCIC,LCIC1 Cre10.g452800 LCIB1,PMP1,LCIB Mackinder et al. 2017
Cre10.g452800 LCIB1,PMP1,LCIB Cre01.g053950 Mackinder et al. 2017
Cre10.g452800 LCIB1,PMP1,LCIB Cre06.g307500 LCIC,LCIC1 Mackinder et al. 2017
Cre10.g452800 LCIB1,PMP1,LCIB Cre10.g452800 LCIB1,PMP1,LCIB Mackinder et al. 2017
Cre16.g663450 LCI11B,BST3,LCI11 Cre10.g452800 LCIB1,PMP1,LCIB Mackinder et al. 2017

Mutant Strains

Insertion Junction Mutant Strain Insertion Junction Feature Confidence (%) Genome Version
CLIP2.000113_1 CLIP2.000113 5'UTR 80 6.1
CLIP2.000113_2 CLIP2.000113 5'UTR 80 6.1
CLIP2.000400_1 CLIP2.000400 CDS 80 6.1
CLIP2.000400_2 CLIP2.000400 CDS 80 6.1
CLIP2.000754_1 CLIP2.000754 5'UTR 80 6.1
CLIP2.001077_1 CLIP2.001077 CDS 80 6.1
LMJ.RY0402.065449_1 LMJ.RY0402.065449 3'UTR 73 5.5
LMJ.RY0402.104508_1 LMJ.RY0402.104508 3'UTR 73 5.5
LMJ.RY0402.122306_2 LMJ.RY0402.122306 3'UTR 73 5.5
LMJ.RY0402.131329_1 LMJ.RY0402.131329 3'UTR 73 5.5
LMJ.RY0402.154803_1 LMJ.RY0402.154803 CDS 73 5.5
LMJ.RY0402.173287_1 LMJ.RY0402.173287 CDS 95 5.5
LMJ.RY0402.173287_2 LMJ.RY0402.173287 CDS 95 5.5
LMJ.RY0402.206055_1 LMJ.RY0402.206055 3'UTR 95 5.5
LMJ.RY0402.206055_2 LMJ.RY0402.206055 3'UTR 95 5.5
LMJ.RY0402.210024_1 LMJ.RY0402.210024 3'UTR 73 5.5
LMJ.RY0402.215132_1 LMJ.RY0402.215132 5'UTR 73 5.5
LMJ.RY0402.222931_1 LMJ.RY0402.222931 3'UTR 73 5.5
LMJ.RY0402.251829_2 LMJ.RY0402.251829 3'UTR 95 5.5
LMJ.RY0402.251829_3 LMJ.RY0402.251829 3'UTR 95 5.5
LMJ.RY0402.257208_1 LMJ.RY0402.257208 3'UTR 73 5.5
LMJ.SG0182.016870_1 LMJ.SG0182.016870 CDS 75 5.3

Gene Annotations

PFAM:
PANTHER: PTHR38016 PTHR38016:SF1
KEGG_ec:
KEGG_orthology:
KOG:
Gene ontology terms::
Best arabidopsis TAIR name:
Best arabidopsis TAIR symbol:
Best arabidopsis TAIR defline:
Phytozome Locus Page

Phenotypes

Our phenotype screens did not find statistically significant results for this gene.