Gene: Cre06.g307500
Overview
| Common name: | LCIC,LCIC1 |
| Defline: | Low-CO2 inducible protein C |
| Description: | low-CO2 inducible protein; homologous to LCIB with which it forms a complex; differentially expressed in Volvox regA mutant, impaired in somatic differentiation; regulated by CCM1 [PMID: 15235119]; localization is diffuse in chloroplast stroma under high-CO2 and low-CO2 conditions, but aggregated around pyrenoid as ring-like structure under very low-CO2 conditions; Crystal structure of LCIB and LCIC harbor motifs bearing close resemblance to the active site of canonical beta type carbonic anhydrase, sugges |
| Synonyms: | LCIC,g7121.t1 |
| Chromosome: | chromosome 6 |
Protein Localization
The plasmid for this gene is not available.
Imaged strain: CSI_FC1B03
Imaging conditions: Tris-Phosphate media, air, 150 uM photons/m2/s, shaking in 96-well plate; imaged after 48 hours.
Classification(s):
chloroplast/pyrenoid/pyrenoid periphery enriched
If you reference these protein localization data in a manuscript, please cite: Mackinder et al. 2017.
 |
| Venus Venus+Chlorophyll |
Protein-Protein Interactions
| Bait ID | Bait Name | Prey ID | Prey Name | Reference |
|---|---|---|---|---|
| Cre06.g307500 | LCIC,LCIC1 | Cre01.g053950 | Mackinder et al. 2017 | |
| Cre06.g307500 | LCIC,LCIC1 | Cre04.g222800 | LCID,LCID1 | Mackinder et al. 2017 |
| Cre06.g307500 | LCIC,LCIC1 | Cre06.g278197 | SENP7,SENP6 | Mackinder et al. 2017 |
| Cre06.g307500 | LCIC,LCIC1 | Cre06.g307500 | LCIC,LCIC1 | Mackinder et al. 2017 |
| Cre06.g307500 | LCIC,LCIC1 | Cre10.g452800 | LCIB1,PMP1,LCIB | Mackinder et al. 2017 |
| Cre06.g307500 | LCIC,LCIC1 | Cre13.g571050 | Mackinder et al. 2017 | |
| Cre10.g452800 | LCIB1,PMP1,LCIB | Cre06.g307500 | LCIC,LCIC1 | Mackinder et al. 2017 |
| Cre16.g662600 | BST1,LCI11,LCI11C | Cre06.g307500 | LCIC,LCIC1 | Mackinder et al. 2017 |
| Cre16.g663450 | LCI11B,BST3,LCI11 | Cre06.g307500 | LCIC,LCIC1 | Mackinder et al. 2017 |
Mutant Strains
| Insertion Junction | Mutant Strain | Insertion Junction Feature | Confidence (%) | Genome Version |
|---|---|---|---|---|
| CLIP2.000383_1 | CLIP2.000383 | 3'UTR | 80 | 6.1 |
| CLIP2.000383_2 | CLIP2.000383 | 3'UTR | 80 | 6.1 |
| CLIP2.000584_1 | CLIP2.000584 | intron | 80 | 6.1 |
| CLIP2.000584_2 | CLIP2.000584 | intron | 80 | 6.1 |
| LMJ.RY0402.191399_1 | LMJ.RY0402.191399 | 3'UTR | 58 | 5.5 |
| LMJ.RY0402.235430_1 | LMJ.RY0402.235430 | intron | 95 | 5.5 |
| LMJ.RY0402.235430_2 | LMJ.RY0402.235430 | intron | 95 | 5.5 |
| LMJ.RY0402.253199_1 | LMJ.RY0402.253199 | 3'UTR | 95 | 5.5 |
| LMJ.RY0402.253199_2 | LMJ.RY0402.253199 | 3'UTR | 95 | 5.5 |
Gene Annotations
| PFAM: | |
| PANTHER: | PTHR38016 |
| KEGG_ec: | |
| KEGG_orthology: | |
| KOG: | |
| Gene ontology terms:: | |
| Best arabidopsis TAIR name: | |
| Best arabidopsis TAIR symbol: | |
| Best arabidopsis TAIR defline: | |
| Phytozome Locus Page |
Phenotypes
Our phenotype screens did not find statistically significant results for this gene.