| Common name: | XAB2 |
| Defline: | (1 of 1) K12867 - pre-mRNA-splicing factor SYF1 (SYF1, XAB2); Transcription-coupled DNA repair protein, possible splicing factor |
| Description: | Involved in transcription-coupled DNA repair. Contains TPR and HAT repeats [PMID: 10944529] |
| Synonyms: | g12677.t1,XAB2,Cre12.g513500.t1.1 |
| Chromosome: | chromosome 12 |
We did not create a plasmid for this gene.
| Bait ID | Bait Name | Prey ID | Prey Name | Reference |
|---|---|---|---|---|
| Cre03.g189500 | Cre12.g513500 | XAB2 | Wang et al. 2023 |
| Insertion Junction | Mutant Strain | Insertion Junction Feature | Confidence (%) | Genome Version |
|---|---|---|---|---|
| CLIP2.033729_1 | CLIP2.033729 | CDS | 80 | 6.1 |
| CLIP2.033729_2 | CLIP2.033729 | CDS | 80 | 6.1 |
| CLIP2.050704_1 | CLIP2.050704 | intron | 80 | 6.1 |
| CLIP2.050704_2 | CLIP2.050704 | intron | 80 | 6.1 |
| CLIP2.066044_1 | CLIP2.066044 | intron | 40 | 6.1 |
| CLIP2.079431_1 | CLIP2.079431 | 3'UTR | 63 | 6.1 |
| LMJ.RY0402.099826_1 | LMJ.RY0402.099826 | intron | 73 | 5.5 |
| LMJ.RY0402.176081_1 | LMJ.RY0402.176081 | CDS | 95 | 5.5 |
| LMJ.RY0402.176081_2 | LMJ.RY0402.176081 | CDS | 95 | 5.5 |
| PFAM: | |
| PANTHER: | PTHR11246 PTHR11246:SF5 |
| KEGG_ec: | |
| KEGG_orthology: | K12867 |
| KOG: | KOG2047 |
| Gene ontology terms:: | GO:0005515, GO:0005622, GO:0006396 |
| Best arabidopsis TAIR name: | AT5G28740 |
| Best arabidopsis TAIR symbol: | |
| Best arabidopsis TAIR defline: | Tetratricopeptide repeat (TPR)-like superfamily protein |
| Phytozome Locus Page |
Our phenotype screens did not find statistically significant results for this gene.