| Common name: | LCI26 |
| Defline: | Low-CO2-induced U-box protein; (1 of 1) PTHR22849//PTHR22849:SF45 - WDSAM1 PROTEIN // SUBFAMILY NOT NAMED |
| Description: | Contains Ubox (smart00504), Modified RING finger domain without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination. SOSUI prediction: 5 transmembrane region. Low-CO2 inducible gene revealed by cDNA array analyses; regulated by CCM1 [PMID: 15235119] |
| Synonyms: | g17098.t1,Cre17.g705450.t1.1 |
| Chromosome: | chromosome 17 |
We did not create a plasmid for this gene.
We did not determine any protein-protein interactions for this gene.
| Insertion Junction | Mutant Strain | Insertion Junction Feature | Confidence (%) | Genome Version |
|---|---|---|---|---|
| CLIP2.016609_1 | CLIP2.016609 | intron | 80 | 6.1 |
| CLIP2.016609_2 | CLIP2.016609 | intron | 80 | 6.1 |
| CLIP2.022011_1 | CLIP2.022011 | CDS | 80 | 6.1 |
| CLIP2.022011_2 | CLIP2.022011 | CDS | 80 | 6.1 |
| CLIP2.023779_1 | CLIP2.023779 | intron | 80 | 6.1 |
| CLIP2.023779_2 | CLIP2.023779 | intron | 80 | 6.1 |
| CLIP2.048231_1 | CLIP2.048231 | intron | 80 | 6.1 |
| CLIP2.052405_3 | CLIP2.052405 | intron | 80 | 6.1 |
| CLIP2.056376_1 | CLIP2.056376 | 5'UTR | 80 | 6.1 |
| CLIP2.056376_2 | CLIP2.056376 | 5'UTR | 80 | 6.1 |
| CLIP2.062955_1 | CLIP2.062955 | 5'UTR | 80 | 6.1 |
| CLIP2.062955_2 | CLIP2.062955 | 5'UTR | 80 | 6.1 |
| LMJ.RY0402.064035_1 | LMJ.RY0402.064035 | CDS | 73 | 5.5 |
| LMJ.RY0402.072956_1 | LMJ.RY0402.072956 | CDS | 73 | 5.5 |
| LMJ.RY0402.093311_1 | LMJ.RY0402.093311 | 5'UTR | 58 | 5.5 |
| PFAM: | PF04564 |
| PANTHER: | PTHR22849 PTHR22849:SF45 |
| KEGG_ec: | EC:6.3.2.19 |
| KEGG_orthology: | |
| KOG: | |
| Gene ontology terms:: | GO:0004842, GO:0016567 |
| Best arabidopsis TAIR name: | AT5G61560.1 |
| Best arabidopsis TAIR symbol: | |
| Best arabidopsis TAIR defline: | U-box domain-containing protein kinase family protein |
| Phytozome Locus Page |
Our phenotype screens did not find statistically significant results for this gene.