Gene: Cre06.g285250
Overview
| Common name: | LHCBM6 |
| Defline: | (1 of 6) K08912 - light-harvesting complex II chlorophyll a/b binding protein 1 (LHCB1); Light-harvesting Chloropyll a/b binding protein of LHCII type I, chloroplast precursor |
| Description: | Note that in P14273 and AAM18056, L101 is changed to Q, L149 to S and M209 to S |
| Synonyms: | Cre06.g285250.t1.1,g6631.t1 |
| Chromosome: | chromosome 6 |
Protein Localization
A plasmid for expressing Cre06.g285250 tagged with the fluorescent protein Venus and affinity epitope 3xFLAG is available: pLM005-Cre06.g285250-Venus-3xFLAG
Imaged strain: CSI_LW10B10
Imaging conditions: Tris-Phosphate media, air, 150 uM photons/m2/s, shaking in 96-well plate; imaged after 16 hours.
Classification(s):
chloroplast/homogeneous/pyrenoid depleted
If you reference these protein localization data in a manuscript, please cite: Wang et al. 2023.
 |  |  |  |
| Venus | Chlorophyll | Bright field | Merged |
Protein-Protein Interactions
We did not determine any protein-protein interactions for this gene.
Mutant Strains
| Insertion Junction | Mutant Strain | Insertion Junction Feature | Confidence (%) | Genome Version |
|---|---|---|---|---|
| CLIP2.003543_1 | CLIP2.003543 | intron | 80 | 6.1 |
| CLIP2.003543_2 | CLIP2.003543 | intron | 80 | 6.1 |
| CLIP2.003662_1 | CLIP2.003662 | 5'UTR | 80 | 6.1 |
| CLIP2.003662_2 | CLIP2.003662 | 5'UTR | 80 | 6.1 |
| CLIP2.005236_1 | CLIP2.005236 | CDS | 80 | 6.1 |
| CLIP2.005236_2 | CLIP2.005236 | CDS | 80 | 6.1 |
| CLIP2.006339_1 | CLIP2.006339 | intron | 80 | 6.1 |
| CLIP2.006339_2 | CLIP2.006339 | intron | 80 | 6.1 |
| CLIP2.006446_1 | CLIP2.006446 | intron | 80 | 6.1 |
| CLIP2.006446_2 | CLIP2.006446 | intron | 80 | 6.1 |
| LMJ.RY0402.042579_1 | LMJ.RY0402.042579 | 5'UTR | 73 | 5.5 |
| LMJ.RY0402.083911_1 | LMJ.RY0402.083911 | 5'UTR | 95 | 5.5 |
| LMJ.RY0402.083911_2 | LMJ.RY0402.083911 | 5'UTR | 95 | 5.5 |
| LMJ.RY0402.107910_1 | LMJ.RY0402.107910 | 5'UTR | 73 | 5.5 |
| LMJ.RY0402.123123_1 | LMJ.RY0402.123123 | 5'UTR | 73 | 5.5 |
| LMJ.RY0402.134289_1 | LMJ.RY0402.134289 | CDS/3'UTR | 73 | 5.5 |
| LMJ.RY0402.147407_1 | LMJ.RY0402.147407 | 5'UTR | 73 | 5.5 |
| LMJ.RY0402.239403_3 | LMJ.RY0402.239403 | intron | 73 | 5.5 |
| LMJ.RY0402.256291_1 | LMJ.RY0402.256291 | CDS | 58 | 5.5 |
Gene Annotations
| PFAM: | PF00504 |
| PANTHER: | PTHR21649 PTHR21649:SF8 |
| KEGG_ec: | EC:1.10.3.9 |
| KEGG_orthology: | K08912 |
| KOG: | |
| Gene ontology terms:: | GO:0009765, GO:0016020 |
| Best arabidopsis TAIR name: | AT2G05100.1 |
| Best arabidopsis TAIR symbol: | LHCB2,LHCB2.1 |
| Best arabidopsis TAIR defline: | photosystem II light harvesting complex gene 2.1 |
| Phytozome Locus Page |
Phenotypes
Our phenotype screens did not find statistically significant results for this gene.