Gene: Cre11.g479300

Overview

Common name:	SRH20
Defline:	SNF2-related DNA/RNA helicase; (1 of 1) K15083 - DNA repair protein RAD16 (RAD16)
Description:	SNF2-related helicase with nitrogenase component 1 conserved site which may indicate involvement in iron-molybdenum cofactor biosynthesis. ChromoDB CHR346;
Synonyms:	g11899.t1,SRH20
Chromosome:	chromosome 11

Protein Localization

We did not create a plasmid for this gene.

Protein-Protein Interactions

We did not determine any protein-protein interactions for this gene.

Mutant Strains

Insertion Junction	Mutant Strain	Insertion Junction Feature	Confidence (%)	Genome Version
CLIP2.028802_1	CLIP2.028802	intron	80	6.1
CLIP2.028802_2	CLIP2.028802	intron	80	6.1
CLIP2.034037_1	CLIP2.034037	CDS	80	6.1
CLIP2.034037_2	CLIP2.034037	CDS	80	6.1
CLIP2.047443_1	CLIP2.047443	intron	80	6.1
CLIP2.047443_2	CLIP2.047443	intron	80	6.1
CLIP2.047687_1	CLIP2.047687	CDS	80	6.1
CLIP2.047687_2	CLIP2.047687	CDS	80	6.1
CLIP2.054421_1	CLIP2.054421	intron	80	6.1
CLIP2.054421_2	CLIP2.054421	intron	80	6.1
CLIP2.067911_1	CLIP2.067911	CDS/intron	63	6.1
LMJ.RY0402.047720_1	LMJ.RY0402.047720	intron	58	5.5
LMJ.RY0402.047720_2	LMJ.RY0402.047720	CDS	73	5.5
LMJ.RY0402.103682_1	LMJ.RY0402.103682	CDS	73	5.5
LMJ.RY0402.108639_1	LMJ.RY0402.108639	intron	73	5.5
LMJ.RY0402.141325_1	LMJ.RY0402.141325	intron	95	5.5
LMJ.RY0402.141325_2	LMJ.RY0402.141325	intron	95	5.5
LMJ.RY0402.178389_1	LMJ.RY0402.178389	3'UTR	73	5.5
LMJ.RY0402.179645_1	LMJ.RY0402.179645	intron	95	5.5
LMJ.RY0402.179645_2	LMJ.RY0402.179645	CDS	95	5.5
LMJ.RY0402.192834_1	LMJ.RY0402.192834	intron	58	5.5
LMJ.RY0402.229924_1	LMJ.RY0402.229924	intron	95	5.5
LMJ.RY0402.229924_2	LMJ.RY0402.229924	intron	95	5.5
LMJ.RY0402.236804_2	LMJ.RY0402.236804	3'UTR	73	5.5
LMJ.RY0402.244782_2	LMJ.RY0402.244782	intron	73	5.5
LMJ.RY0402.256838_1	LMJ.RY0402.256838	CDS	95	5.5
LMJ.RY0402.256838_2	LMJ.RY0402.256838	CDS	95	5.5

Gene Annotations

PFAM:	PF00097, PF00176, PF00271
PANTHER:	PTHR10799 PTHR10799:SF763
KEGG_ec:	EC:3.6.4.12
KEGG_orthology:	K15083
KOG:
Gene ontology terms::	GO:0005515, GO:0005524, GO:0008270, GO:0046872
Best arabidopsis TAIR name:	AT1G05120
Best arabidopsis TAIR symbol:
Best arabidopsis TAIR defline:	Helicase protein with RING/U-box domain
Phytozome Locus Page

Phenotypes

Mutants in this gene exhibit a phenotype under the following conditions:

Cisplatin, screen 1 of 4 ( 98% confidence (FDR = 0.014))

Cisplatin, screen 3 of 4 ( 99% confidence (FDR = 0.00042))

Cisplatin, screen 4 of 4 ( 99% confidence (FDR = 0.00017))

Note: FDR indicates the likelihood that a particular genotype-phenotype relationship is incorrect. Not all mutants in a particular gene show the same phenotype. Please see the mutant pages for each mutant's phenotypes. Complementation is needed to definitively prove a genotype-phenotype link. These data are from a pooled phenotyping experiment.

If you reference the phenotypic data above in a manuscript, please cite: Fauser et al. 2022 Nature Genetics.