Gene: Cre16.g650900

Overview

Common name:
Defline:(1 of 1) IPR000104//IPR001965//IPR011011//IPR017956 - Antifreeze protein, type I // Zinc finger, PHD-type // Zinc finger, FYVE/PHD-type // AT hook, DNA-binding motif
Description:
Synonyms:g15747.t1
Chromosome:chromosome 16

Protein Localization

We did not create a plasmid for this gene.

Protein-Protein Interactions

We did not determine any protein-protein interactions for this gene.

Mutant Strains

Insertion Junction Mutant Strain Insertion Junction Feature Confidence (%) Genome Version
CLIP2.009603_1 CLIP2.009603 intron 80 6.1
CLIP2.009603_2 CLIP2.009603 intron 80 6.1
CLIP2.016307_1 CLIP2.016307 intron 80 6.1
CLIP2.016307_2 CLIP2.016307 intron 80 6.1
CLIP2.018857_1 CLIP2.018857 CDS 80 6.1
CLIP2.026713_1 CLIP2.026713 CDS 80 6.1
CLIP2.026713_2 CLIP2.026713 CDS 80 6.1
CLIP2.030241_1 CLIP2.030241 intron 80 6.1
CLIP2.030241_2 CLIP2.030241 intron 80 6.1
CLIP2.036102_1 CLIP2.036102 intron 80 6.1
CLIP2.036102_2 CLIP2.036102 intron 80 6.1
CLIP2.040050_1 CLIP2.040050 CDS 80 6.1
CLIP2.050412_1 CLIP2.050412 3'UTR 40 6.1
CLIP2.060541_1 CLIP2.060541 3'UTR 80 6.1
CLIP2.062902_1 CLIP2.062902 3'UTR 80 6.1
CLIP2.069164_2 CLIP2.069164 3'UTR 80 6.1
CLIP2.072943_1 CLIP2.072943 3'UTR 80 6.1
CLIP2.074992_1 CLIP2.074992 3'UTR 80 6.1
LMJ.RY0402.055461_1 LMJ.RY0402.055461 3'UTR 95 5.5
LMJ.RY0402.055461_2 LMJ.RY0402.055461 3'UTR 95 5.5
LMJ.RY0402.063964_1 LMJ.RY0402.063964 CDS 95 5.5
LMJ.RY0402.063964_2 LMJ.RY0402.063964 CDS 95 5.5
LMJ.RY0402.088089_1 LMJ.RY0402.088089 intron 95 5.5
LMJ.RY0402.088089_2 LMJ.RY0402.088089 intron 95 5.5
LMJ.RY0402.088546_1 LMJ.RY0402.088546 CDS 58 5.5
LMJ.RY0402.096483_1 LMJ.RY0402.096483 3'UTR 95 5.5
LMJ.RY0402.096483_2 LMJ.RY0402.096483 3'UTR 95 5.5
LMJ.RY0402.114060_1 LMJ.RY0402.114060 CDS 58 5.5
LMJ.RY0402.121756_1 LMJ.RY0402.121756 CDS 73 5.5
LMJ.RY0402.126599_1 LMJ.RY0402.126599 intron 95 5.5
LMJ.RY0402.126599_2 LMJ.RY0402.126599 intron 95 5.5
LMJ.RY0402.137575_1 LMJ.RY0402.137575 CDS 73 5.5
LMJ.RY0402.163206_1 LMJ.RY0402.163206 intron 95 5.5
LMJ.RY0402.163206_2 LMJ.RY0402.163206 intron 95 5.5
LMJ.RY0402.173847_3 LMJ.RY0402.173847 CDS 95 5.5
LMJ.RY0402.173847_4 LMJ.RY0402.173847 CDS 95 5.5
LMJ.RY0402.173847_5 LMJ.RY0402.173847 CDS 58 5.5
LMJ.RY0402.176276_1 LMJ.RY0402.176276 CDS 73 5.5
LMJ.RY0402.176464_1 LMJ.RY0402.176464 CDS 73 5.5
LMJ.RY0402.186901_1 LMJ.RY0402.186901 CDS 95 5.5
LMJ.RY0402.186901_2 LMJ.RY0402.186901 CDS 95 5.5
LMJ.RY0402.231429_1 LMJ.RY0402.231429 CDS 73 5.5
LMJ.RY0402.246526_1 LMJ.RY0402.246526 intron 73 5.5
LMJ.RY0402.251649_1 LMJ.RY0402.251649 CDS 95 5.5
LMJ.RY0402.251649_2 LMJ.RY0402.251649 CDS 95 5.5

Gene Annotations

PFAM:
PANTHER: PTHR32074
KEGG_ec:EC:2.1.1.43
KEGG_orthology:K10767
KOG:KOG4176
Gene ontology terms::GO:0003677, GO:0005515, GO:0008270, GO:0042309, GO:0050825, GO:0050826
Best arabidopsis TAIR name:AT5G48090.1
Best arabidopsis TAIR symbol:ELP1
Best arabidopsis TAIR defline:EDM2-like protein1
Phytozome Locus Page

Phenotypes

Mutants in this gene exhibit a phenotype under the following conditions:

Hydroxyurea, screen 2 of 2 ( 98% confidence (FDR = 0.017))
LAT027F04, screen 1 of 1 ( 99% confidence (FDR = 0.0024))
LAT030E11, screen 1 of 1 ( 91% confidence (FDR = 0.087))
LAT033G04, screen 1 of 1 ( 99% confidence (FDR = 0.0042))
LAT041D11, screen 1 of 1 ( 96% confidence (FDR = 0.035))
LAT042F07, screen 1 of 1 ( 80% confidence (FDR = 0.2))

Note: FDR indicates the likelihood that a particular genotype-phenotype relationship is incorrect. Not all mutants in a particular gene show the same phenotype. Please see the mutant pages for each mutant's phenotypes. Complementation is needed to definitively prove a genotype-phenotype link. These data are from a pooled phenotyping experiment.

If you reference the phenotypic data above in a manuscript, please cite: Fauser et al. 2022 Nature Genetics.