Gene: Cre06.g256850
Overview
| Common name: | SND1B |
| Defline: | SAND domain-encoding short ORF; (1 of 68) 2.1.1.43 - Histone-lysine N-methyltransferase / Protein-lysine N-methyltransferase |
| Description: | contains divergent SAND domain |
| Synonyms: | SND1B,g5772.t1 |
| Chromosome: | chromosome 6 |
Protein Localization
A plasmid for expressing Cre06.g256850 tagged with the fluorescent protein Venus and affinity epitope 3xFLAG is available: pLM005-Cre06.g256850-Venus-3xFLAG
Imaged strain: CSI_LW04F5
Imaging conditions: Tris-Phosphate media, air, 150 uM photons/m2/s, shaking in 96-well plate; imaged after 16 hours.
Classification(s):
chloroplast/chloroplast punctate dots
If you reference these protein localization data in a manuscript, please cite: Wang et al. 2023.
 |  |  |  |
| Venus | Chlorophyll | Bright field | Merged |
Protein-Protein Interactions
| Bait ID | Bait Name | Prey ID | Prey Name | Reference |
|---|---|---|---|---|
| Cre06.g256850 | SND1B | Cre01.g018200 | Wang et al. 2023 | |
| Cre06.g256850 | SND1B | Cre01.g021850 | HEL2 | Wang et al. 2023 |
| Cre06.g256850 | SND1B | Cre03.g162150 | Wang et al. 2023 | |
| Cre06.g256850 | SND1B | Cre03.g175850 | EEP1 | Wang et al. 2023 |
| Cre06.g256850 | SND1B | Cre03.g178600 | TOP1 | Wang et al. 2023 |
| Cre06.g256850 | SND1B | Cre06.g256850 | SND1B | Wang et al. 2023 |
| Cre06.g256850 | SND1B | Cre06.g285401 | HLP1,FAP355 | Wang et al. 2023 |
| Cre06.g256850 | SND1B | Cre08.g377200 | SRH16 | Wang et al. 2023 |
| Cre06.g256850 | SND1B | Cre08.g380151 | Wang et al. 2023 | |
| Cre06.g256850 | SND1B | Cre11.g467751 | Wang et al. 2023 | |
| Cre06.g256850 | SND1B | Cre12.g515700 | Wang et al. 2023 | |
| Cre06.g256850 | SND1B | Cre13.g607500 | KU70 | Wang et al. 2023 |
| Cre06.g256850 | SND1B | Cre15.g641600 | Wang et al. 2023 | |
| Cre06.g256850 | SND1B | Cre17.g702650 | Wang et al. 2023 |
Mutant Strains
| Insertion Junction | Mutant Strain | Insertion Junction Feature | Confidence (%) | Genome Version |
|---|---|---|---|---|
| CLIP2.001281_1 | CLIP2.001281 | intron | 80 | 6.1 |
| CLIP2.001281_2 | CLIP2.001281 | intron | 80 | 6.1 |
| CLIP2.003442_1 | CLIP2.003442 | intron | 80 | 6.1 |
| CLIP2.003442_2 | CLIP2.003442 | intron | 80 | 6.1 |
| CLIP2.004092_1 | CLIP2.004092 | intron | 80 | 6.1 |
| CLIP2.004092_2 | CLIP2.004092 | intron | 80 | 6.1 |
| LMJ.RY0402.112008_1 | LMJ.RY0402.112008 | CDS | 73 | 5.5 |
Gene Annotations
| PFAM: | |
| PANTHER: | |
| KEGG_ec: | EC:2.1.1.43 |
| KEGG_orthology: | |
| KOG: | |
| Gene ontology terms:: | |
| Best arabidopsis TAIR name: | AT4G27910.1 |
| Best arabidopsis TAIR symbol: | ATX4,SDG16 |
| Best arabidopsis TAIR defline: | SET domain protein 16 |
| Phytozome Locus Page |
Phenotypes
Our phenotype screens did not find statistically significant results for this gene.