Gene: Cre07.g335750

Overview

Common name:IFT88
Defline:(1 of 1) K16474 - intraflagellar transport protein 88 (IFT88); Intraflagellar Transport Protein 88
Description:Component of IFT-B1 particle; Has 2 TPR motifs
Synonyms:g7816.t1
Chromosome:chromosome 7

Protein Localization

We did not create a plasmid for this gene.

Protein-Protein Interactions

We did not determine any protein-protein interactions for this gene.

Mutant Strains

Insertion Junction Mutant Strain Insertion Junction Feature Confidence (%) Genome Version
CLIP2.015505_1 CLIP2.015505 3'UTR 80 6.1
CLIP2.023004_1 CLIP2.023004 3'UTR 80 6.1
CLIP2.023004_2 CLIP2.023004 3'UTR 80 6.1
CLIP2.030765_1 CLIP2.030765 intron 80 6.1
CLIP2.030765_2 CLIP2.030765 intron 80 6.1
CLIP2.032783_1 CLIP2.032783 CDS 80 6.1
CLIP2.032783_2 CLIP2.032783 CDS 80 6.1
CLIP2.037825_1 CLIP2.037825 3'UTR 80 6.1
CLIP2.046231_2 CLIP2.046231 CDS 80 6.1
CLIP2.046231_3 CLIP2.046231 CDS 80 6.1
CLIP2.051476_1 CLIP2.051476 3'UTR 80 6.1
CLIP2.051476_2 CLIP2.051476 3'UTR 80 6.1
CLIP2.061365_1 CLIP2.061365 3'UTR 80 6.1
CLIP2.061365_2 CLIP2.061365 3'UTR 80 6.1
CLIP2.068888_1 CLIP2.068888 3'UTR 80 6.1
CLIP2.073926_1 CLIP2.073926 3'UTR 80 6.1
CLIP2.073926_2 CLIP2.073926 3'UTR 80 6.1
LMJ.RY0402.039482_1 LMJ.RY0402.039482 intron 95 5.5
LMJ.RY0402.039482_2 LMJ.RY0402.039482 intron 95 5.5
LMJ.RY0402.048085_1 LMJ.RY0402.048085 3'UTR 73 5.5
LMJ.RY0402.057309_1 LMJ.RY0402.057309 3'UTR 73 5.5
LMJ.RY0402.091294_2 LMJ.RY0402.091294 3'UTR 73 5.5
LMJ.RY0402.158294_1 LMJ.RY0402.158294 5'UTR 95 5.5
LMJ.RY0402.158294_2 LMJ.RY0402.158294 5'UTR 95 5.5
LMJ.RY0402.171422_1 LMJ.RY0402.171422 3'UTR 95 5.5
LMJ.RY0402.171422_2 LMJ.RY0402.171422 3'UTR 95 5.5
LMJ.RY0402.218892_1 LMJ.RY0402.218892 intron 73 5.5
LMJ.SG0182.008110_1 LMJ.SG0182.008110 3'UTR 75 5.3

Gene Annotations

PFAM:PF13181, PF13371, PF13414
PANTHER: PTHR23083 PTHR23083:SF6
KEGG_ec:
KEGG_orthology:K16474
KOG:KOG2003
Gene ontology terms::GO:0005515
Best arabidopsis TAIR name:AT3G04240.1
Best arabidopsis TAIR symbol:SEC
Best arabidopsis TAIR defline:Tetratricopeptide repeat (TPR)-like superfamily protein
Phytozome Locus Page

Phenotypes

Mutants in this gene exhibit a phenotype under the following conditions:

Photosynthesis or light sensitivity, screen 7 of 12 ( 93% confidence (FDR = 0.067))
Photosynthesis or light sensitivity, screen 12 of 12 ( 72% confidence (FDR = 0.28))

Note: FDR indicates the likelihood that a particular genotype-phenotype relationship is incorrect. Not all mutants in a particular gene show the same phenotype. Please see the mutant pages for each mutant's phenotypes. Complementation is needed to definitively prove a genotype-phenotype link. These data are from a pooled phenotyping experiment.

If you reference the phenotypic data above in a manuscript, please cite: Fauser et al. 2022 Nature Genetics.