Gene: Cre09.g393765
Overview
| Common name: | LMR1 |
| Defline: | (1 of 14) PF01476 - LysM domain (LysM); Predicted protein with LysM domain |
| Description: | similar to Volvox carteri clone A chitinase [PMID: 9596636, Genbank entry AF058716]; contains two LysM-domains which are found in a variety of enzymes involved in bacterial cell wall degradation; the domain may have a general peptidoglycan binding function |
| Synonyms: | g9763.t1,Cre02.g129800.t1.2,Cre02.g129800.t1.1,LMR1 |
| Chromosome: | chromosome 9 |
Protein Localization
A plasmid for expressing Cre09.g393765 tagged with the fluorescent protein Venus and affinity epitope 3xFLAG is available: pLM005-Cre09.g393765-Venus-3xFLAG
Imaged strain: CSI_LW01G6
Imaging conditions: Tris-Phosphate media, air, 150 uM photons/m2/s, shaking in 96-well plate; imaged after 16 hours.
Classification(s):
chloroplast envelope/not homogeneous/patches
If you reference these protein localization data in a manuscript, please cite: Wang et al. 2023.
 |  |  |  |
| Venus | Chlorophyll | Bright field | Merged |
Protein-Protein Interactions
| Bait ID | Bait Name | Prey ID | Prey Name | Reference |
|---|---|---|---|---|
| Cre09.g393765 | LMR1 | Cre09.g393765 | LMR1 | Wang et al. 2023 |
| Cre09.g393765 | LMR1 | Cre16.g663150 | Wang et al. 2023 |
Mutant Strains
| Insertion Junction | Mutant Strain | Insertion Junction Feature | Confidence (%) | Genome Version |
|---|---|---|---|---|
| CLIP2.002456_1 | CLIP2.002456 | intron | 80 | 6.1 |
| CLIP2.002456_2 | CLIP2.002456 | intron | 80 | 6.1 |
| CLIP2.002646_1 | CLIP2.002646 | CDS | 80 | 6.1 |
| CLIP2.002646_2 | CLIP2.002646 | CDS | 80 | 6.1 |
| CLIP2.003177_1 | CLIP2.003177 | 5'UTR | 80 | 6.1 |
| CLIP2.003177_2 | CLIP2.003177 | 5'UTR | 80 | 6.1 |
| CLIP2.003531_1 | CLIP2.003531 | 3'UTR/CDS | 80 | 6.1 |
| CLIP2.004550_1 | CLIP2.004550 | 3'UTR | 80 | 6.1 |
| CLIP2.004817_1 | CLIP2.004817 | 5'UTR | 80 | 6.1 |
| CLIP2.004817_2 | CLIP2.004817 | 5'UTR | 80 | 6.1 |
| LMJ.RY0402.074845_1 | LMJ.RY0402.074845 | 3'UTR | 73 | 5.5 |
| LMJ.RY0402.107526_1 | LMJ.RY0402.107526 | 3'UTR | 95 | 5.5 |
| LMJ.RY0402.107526_2 | LMJ.RY0402.107526 | 3'UTR | 95 | 5.5 |
| LMJ.RY0402.214152_2 | LMJ.RY0402.214152 | 3'UTR | 95 | 5.5 |
| LMJ.RY0402.214152_3 | LMJ.RY0402.214152 | 3'UTR | 95 | 5.5 |
| LMJ.RY0402.222720_2 | LMJ.RY0402.222720 | intron | 95 | 5.5 |
| LMJ.RY0402.222720_3 | LMJ.RY0402.222720 | intron | 95 | 5.5 |
Gene Annotations
| PFAM: | PF01476 |
| PANTHER: | PTHR21666:SF8 PTHR21666 |
| KEGG_ec: | |
| KEGG_orthology: | |
| KOG: | |
| Gene ontology terms:: | GO:0016998 |
| Best arabidopsis TAIR name: | |
| Best arabidopsis TAIR symbol: | |
| Best arabidopsis TAIR defline: | |
| Phytozome Locus Page |
Phenotypes
Our phenotype screens did not find statistically significant results for this gene.