Gene: Cre09.g396139

Overview

Common name:
Defline:	(1 of 5) K14326 - regulator of nonsense transcripts 1 (UPF1, RENT1)
Description:
Synonyms:	g9828.t1,Cre02.g132750.t1.1
Chromosome:	chromosome 9

Protein Localization

We did not create a plasmid for this gene.

Protein-Protein Interactions

We did not determine any protein-protein interactions for this gene.

Mutant Strains

Insertion Junction	Mutant Strain	Insertion Junction Feature	Confidence (%)	Genome Version
CLIP2.011597_1	CLIP2.011597	intron	80	6.1
CLIP2.011597_2	CLIP2.011597	intron	80	6.1
CLIP2.017528_1	CLIP2.017528	intron	80	6.1
CLIP2.017528_2	CLIP2.017528	intron	80	6.1
CLIP2.020892_2	CLIP2.020892	intron	63	6.1
CLIP2.031388_1	CLIP2.031388	intron	80	6.1
CLIP2.031388_2	CLIP2.031388	intron	80	6.1
CLIP2.031621_1	CLIP2.031621	intron	80	6.1
CLIP2.031621_2	CLIP2.031621	intron	80	6.1
CLIP2.033619_1	CLIP2.033619	CDS	80	6.1
CLIP2.033619_2	CLIP2.033619	CDS	80	6.1
CLIP2.040748_1	CLIP2.040748	intron	80	6.1
CLIP2.040748_2	CLIP2.040748	intron	80	6.1
CLIP2.063262_1	CLIP2.063262	5'UTR	80	6.1
CLIP2.063262_2	CLIP2.063262	5'UTR	80	6.1
CLIP2.068164_1	CLIP2.068164	3'UTR	40	6.1
LMJ.RY0402.050300_1	LMJ.RY0402.050300	3'UTR	73	5.5
LMJ.RY0402.056728_1	LMJ.RY0402.056728	intron	73	5.5
LMJ.RY0402.080411_1	LMJ.RY0402.080411	intron	95	5.5
LMJ.RY0402.080411_2	LMJ.RY0402.080411	intron	95	5.5
LMJ.RY0402.082272_1	LMJ.RY0402.082272	3'UTR	95	5.5
LMJ.RY0402.082272_2	LMJ.RY0402.082272	3'UTR	95	5.5
LMJ.RY0402.084761_2	LMJ.RY0402.084761	3'UTR	58	5.5
LMJ.RY0402.087725_1	LMJ.RY0402.087725	3'UTR	95	5.5
LMJ.RY0402.087725_2	LMJ.RY0402.087725	3'UTR	95	5.5
LMJ.RY0402.103449_1	LMJ.RY0402.103449	intron	73	5.5
LMJ.RY0402.174791_1	LMJ.RY0402.174791	CDS	73	5.5
LMJ.RY0402.175912_1	LMJ.RY0402.175912	CDS	73	5.5
LMJ.RY0402.195292_1	LMJ.RY0402.195292	intron	58	5.5
LMJ.RY0402.201658_1	LMJ.RY0402.201658	intron	73	5.5
LMJ.RY0402.213051_3	LMJ.RY0402.213051	intron	73	5.5
LMJ.RY0402.227739_1	LMJ.RY0402.227739	intron	95	5.5
LMJ.RY0402.227739_2	LMJ.RY0402.227739	CDS	95	5.5
LMJ.RY0402.231461_1	LMJ.RY0402.231461	CDS	58	5.5
LMJ.RY0402.235423_1	LMJ.RY0402.235423	3'UTR	73	5.5
LMJ.RY0402.241509_1	LMJ.RY0402.241509	CDS	73	5.5

Gene Annotations

PFAM:	PF13086, PF13087
PANTHER:	PTHR10887
KEGG_ec:	EC:3.6.4.12
KEGG_orthology:	K14326
KOG:
Gene ontology terms::
Best arabidopsis TAIR name:	AT5G47010.1
Best arabidopsis TAIR symbol:	ATUPF1,LBA1,UPF1
Best arabidopsis TAIR defline:	RNA helicase, putative
Phytozome Locus Page

Phenotypes

Our phenotype screens did not find statistically significant results for this gene.