Gene: Cre10.g425050

Overview

Common name:ROC59,ROC28
Defline:(1 of 1) K11807 - WD and tetratricopeptide repeats protein 1 (WDTC1); Rhythm Of Chloroplast 59
Description:WD40- and tetratricopeptide-repeats protein involved in circadian rhythms with possible histone acetyltransferase activity; one of the target genes of the circadian transcription factor ROC75; Matsuo et al.'s (2008) roc28 (rhythm of chloroplast 28) and roc59 circadian bioluminescence rhythm mutant loci map here
Synonyms:ROC28,g10507.t1,ROC59
Chromosome:chromosome 10

Protein Localization

We did not create a plasmid for this gene.

Protein-Protein Interactions

We did not determine any protein-protein interactions for this gene.

Mutant Strains

Insertion Junction Mutant Strain Insertion Junction Feature Confidence (%) Genome Version
CLIP2.001613_1 CLIP2.001613 intron 80 6.1
CLIP2.001613_2 CLIP2.001613 intron 80 6.1
CLIP2.002739_1 CLIP2.002739 CDS 80 6.1
CLIP2.002739_2 CLIP2.002739 CDS 80 6.1
CLIP2.005050_1 CLIP2.005050 intron 80 6.1
CLIP2.005050_2 CLIP2.005050 intron 80 6.1
CLIP2.006614_1 CLIP2.006614 intron 80 6.1
CLIP2.006614_2 CLIP2.006614 intron 80 6.1
CLIP2.007267_1 CLIP2.007267 intron 80 6.1
CLIP2.007267_2 CLIP2.007267 intron 80 6.1
LMJ.RY0402.045744_1 LMJ.RY0402.045744 3'UTR 95 5.5
LMJ.RY0402.045744_2 LMJ.RY0402.045744 3'UTR 95 5.5
LMJ.RY0402.051461_1 LMJ.RY0402.051461 3'UTR 95 5.5
LMJ.RY0402.051461_2 LMJ.RY0402.051461 3'UTR 95 5.5
LMJ.RY0402.072887_2 LMJ.RY0402.072887 intron 73 5.5
LMJ.RY0402.072887_3 LMJ.RY0402.072887 intron 73 5.5
LMJ.RY0402.086297_3 LMJ.RY0402.086297 intron 58 5.5
LMJ.RY0402.127152_1 LMJ.RY0402.127152 3'UTR 95 5.5
LMJ.RY0402.127152_2 LMJ.RY0402.127152 3'UTR 95 5.5
LMJ.RY0402.196279_1 LMJ.RY0402.196279 intron 73 5.5
LMJ.RY0402.198556_1 LMJ.RY0402.198556 3'UTR 73 5.5
LMJ.RY0402.201146_1 LMJ.RY0402.201146 CDS 73 5.5
LMJ.SG0182.010744_1 LMJ.SG0182.010744 3'UTR 75 5.3

Gene Annotations

PFAM:PF00400, PF13414
PANTHER: PTHR15574 PTHR15574:SF40
KEGG_ec:
KEGG_orthology:K11807
KOG:KOG1310
Gene ontology terms::GO:0005515, GO:0042309, GO:0050825, GO:0050826
Best arabidopsis TAIR name:AT5G10940
Best arabidopsis TAIR symbol:
Best arabidopsis TAIR defline:transducin family protein / WD-40 repeat family protein
Phytozome Locus Page

Phenotypes

Mutants in this gene exhibit a phenotype under the following conditions:

Paromomycin, screen 3 of 6 ( 81% confidence (FDR = 0.19))

Note: FDR indicates the likelihood that a particular genotype-phenotype relationship is incorrect. Not all mutants in a particular gene show the same phenotype. Please see the mutant pages for each mutant's phenotypes. Complementation is needed to definitively prove a genotype-phenotype link. These data are from a pooled phenotyping experiment.

If you reference the phenotypic data above in a manuscript, please cite: Fauser et al. 2022 Nature Genetics.