Gene: Cre03.g179800
Overview
| Common name: | LCI24 |
| Defline: | Low-CO2-inducible membrane protein; (1 of 5) PF07466 - Protein of unknown function (DUF1517) (DUF1517) |
| Description: | Low-CO2 inducible gene revealed by cDNA array analyses; SOSUI prediction: 3 transmembrane region; probably organelle-targetted; regulated by CCM1 [PMID: 15235119] |
| Synonyms: | g3721.t1,Cre03.g179800.t1.1 |
| Chromosome: | chromosome 3 |
Protein Localization
The plasmid for this gene is not available.
Imaged strain: CSI_FC1F05
Imaging conditions: Tris-Phosphate media, air, 150 uM photons/m2/s, shaking in 96-well plate; imaged after 48 hours.
Classification(s):
chloroplast/homogeneous/not pyrenoid depleted
If you reference these protein localization data in a manuscript, please cite: Mackinder et al. 2017.
 |
| Venus Venus+Chlorophyll |
Protein-Protein Interactions
| Bait ID | Bait Name | Prey ID | Prey Name | Reference |
|---|---|---|---|---|
| Cre03.g179800 | LCI24 | Cre01.g004450 | CPLD42 | Mackinder et al. 2017 |
| Cre03.g179800 | LCI24 | Cre03.g179800 | LCI24 | Mackinder et al. 2017 |
| Cre03.g179800 | LCI24 | Cre15.g639150 | MDM38 | Mackinder et al. 2017 |
Mutant Strains
| Insertion Junction | Mutant Strain | Insertion Junction Feature | Confidence (%) | Genome Version |
|---|---|---|---|---|
| CLIP2.000024_1 | CLIP2.000024 | 5'UTR | 80 | 6.1 |
| CLIP2.000024_2 | CLIP2.000024 | 5'UTR | 80 | 6.1 |
| CLIP2.000108_1 | CLIP2.000108 | CDS | 80 | 6.1 |
| CLIP2.000661_1 | CLIP2.000661 | 5'UTR | 80 | 6.1 |
| CLIP2.000661_2 | CLIP2.000661 | 5'UTR | 80 | 6.1 |
| CLIP2.000790_1 | CLIP2.000790 | 5'UTR | 80 | 6.1 |
| CLIP2.000790_2 | CLIP2.000790 | 5'UTR | 80 | 6.1 |
| CLIP2.000889_1 | CLIP2.000889 | 3'UTR | 80 | 6.1 |
| CLIP2.000889_2 | CLIP2.000889 | 3'UTR | 80 | 6.1 |
| CLIP2.001051_1 | CLIP2.001051 | 5'UTR | 80 | 6.1 |
| CLIP2.001051_2 | CLIP2.001051 | 5'UTR | 80 | 6.1 |
| CLIP2.075009_1 | CLIP2.075009 | 3'UTR | 80 | 6.1 |
| LMJ.RY0402.081586_1 | LMJ.RY0402.081586 | 3'UTR | 73 | 5.5 |
| LMJ.RY0402.122101_1 | LMJ.RY0402.122101 | 3'UTR | 58 | 5.5 |
| LMJ.RY0402.239673_1 | LMJ.RY0402.239673 | intron | 58 | 5.5 |
Gene Annotations
| PFAM: | PF07466 |
| PANTHER: | |
| KEGG_ec: | |
| KEGG_orthology: | |
| KOG: | |
| Gene ontology terms:: | |
| Best arabidopsis TAIR name: | |
| Best arabidopsis TAIR symbol: | |
| Best arabidopsis TAIR defline: | |
| Phytozome Locus Page |
Phenotypes
Our phenotype screens did not find statistically significant results for this gene.