Gene: Cre12.g507300
Overview
| Common name: | LCI30 |
| Defline: | (1 of 1) K14842 - ribosome biogenesis protein NSA2 (NSA2); Low-CO2-inducible protein 30 |
| Description: | Hypothetical protein highly conserved with protein on chromosome 5 of Arabidopsis and also with mammalian protein;similar to putative TGF (transforming growth factor) beta inducible nuclear protein TINP1 [Oryza sativa (japonica cultivar-group)]; May be associated with the ribosome.; Low-CO2 inducible gene revealed by cDNA array analyses. |
| Synonyms: | Cre12.g507300.t1.1,g12416.t1 |
| Chromosome: | chromosome 12 |
Protein Localization
The plasmid for this gene is not available.
Imaged strain: CSI_FC1E10
Imaging conditions: Tris-Phosphate media, air, 150 uM photons/m2/s, shaking in 96-well plate; imaged after 48 hours.
Classification(s):
nucleus/nucleoplasm
If you reference these protein localization data in a manuscript, please cite: Mackinder et al. 2017.
 |
| Venus Venus+Chlorophyll |
Protein-Protein Interactions
Mutant Strains
| Insertion Junction | Mutant Strain | Insertion Junction Feature | Confidence (%) | Genome Version |
|---|---|---|---|---|
| CLIP2.000172_1 | CLIP2.000172 | 3'UTR | 80 | 6.1 |
| CLIP2.000172_2 | CLIP2.000172 | 3'UTR | 80 | 6.1 |
| CLIP2.000199_1 | CLIP2.000199 | 3'UTR | 80 | 6.1 |
| CLIP2.000199_2 | CLIP2.000199 | 3'UTR | 80 | 6.1 |
| CLIP2.000388_1 | CLIP2.000388 | 3'UTR | 80 | 6.1 |
| CLIP2.000388_2 | CLIP2.000388 | 3'UTR | 80 | 6.1 |
| CLIP2.000830_3 | CLIP2.000830 | 3'UTR | 80 | 6.1 |
| CLIP2.000830_4 | CLIP2.000830 | 3'UTR | 80 | 6.1 |
| CLIP2.001003_1 | CLIP2.001003 | 3'UTR | 80 | 6.1 |
| CLIP2.001003_2 | CLIP2.001003 | 3'UTR | 80 | 6.1 |
| LMJ.RY0402.085235_1 | LMJ.RY0402.085235 | 3'UTR | 95 | 5.5 |
| LMJ.RY0402.085235_2 | LMJ.RY0402.085235 | 3'UTR | 95 | 5.5 |
| LMJ.RY0402.124635_2 | LMJ.RY0402.124635 | 3'UTR | 95 | 5.5 |
| LMJ.RY0402.140070_1 | LMJ.RY0402.140070 | 3'UTR | 73 | 5.5 |
| LMJ.RY0402.169410_1 | LMJ.RY0402.169410 | 3'UTR | 73 | 5.5 |
Gene Annotations
| PFAM: | PF01201 |
| PANTHER: | PTHR12642 |
| KEGG_ec: | |
| KEGG_orthology: | K14842 |
| KOG: | KOG3163 |
| Gene ontology terms:: | |
| Best arabidopsis TAIR name: | AT5G06360 |
| Best arabidopsis TAIR symbol: | |
| Best arabidopsis TAIR defline: | Ribosomal protein S8e family protein |
| Phytozome Locus Page |
Phenotypes
Our phenotype screens did not find statistically significant results for this gene.