Gene: Cre12.g531400 (Genome version: v5.5)

Overview

Common name:	NPH4,NPHP4
Defline:	Nephrocystin-4-like protein
Description:	Found in basal body proteome as POC10 [PMID: 15964273]. Mammalian homolog is NPHP-4, also known as nephroretinin, gene mutated in Senior-Loken syndrome.
Synonyms:	g13078.t1,NPH4
Chromosome:	chromosome_12

Protein Localization

We did not create a plasmid for this gene.

Protein-Protein Interactions

We did not determine any protein-protein interactions for this gene.

Mutant Strains

Insertion Junction	Mutant Strain	Orientation	Insertion Junction Feature	Confidence (%)
LMJ.RY0402.039169_1	LMJ.RY0402.039169	antisense	intron	73
LMJ.RY0402.042518_1	LMJ.RY0402.042518	antisense	CDS	73
LMJ.RY0402.085956_1	LMJ.RY0402.085956	antisense	CDS	73
LMJ.RY0402.090938_1	LMJ.RY0402.090938	antisense	CDS	58
LMJ.RY0402.128073_1	LMJ.RY0402.128073	antisense	CDS	95
LMJ.RY0402.128073_2	LMJ.RY0402.128073	sense	CDS	95
LMJ.RY0402.141013_1	LMJ.RY0402.141013	antisense	3'UTR	73
LMJ.RY0402.143356_1	LMJ.RY0402.143356	sense	CDS	73
LMJ.RY0402.164899_1	LMJ.RY0402.164899	sense	CDS	73
LMJ.RY0402.166074_2	LMJ.RY0402.166074	antisense	CDS	73
LMJ.RY0402.177769_2	LMJ.RY0402.177769	antisense	CDS	73
LMJ.RY0402.186717_1	LMJ.RY0402.186717	sense	CDS	73
LMJ.RY0402.189745_1	LMJ.RY0402.189745	antisense	intron	73
LMJ.RY0402.235220_1	LMJ.RY0402.235220	sense	intron	95
LMJ.RY0402.235220_2	LMJ.RY0402.235220	sense	intron	95
LMJ.RY0402.235507_2	LMJ.RY0402.235507	antisense	intron	73
LMJ.RY0402.250685_1	LMJ.RY0402.250685	sense	CDS	95
LMJ.RY0402.250685_2	LMJ.RY0402.250685	sense	CDS	95

Gene Annotations

PFAM:	PF00612
PANTHER:
KEGG_ec:
KEGG_orthology:
KOG:
Gene ontology terms::	GO:0005515
Best arabidopsis TAIR name:
Best arabidopsis TAIR symbol:
Best arabidopsis TAIR defline:
Phytozome Locus Page

Phenotypes

Mutants in this gene exhibit a phenotype under the following conditions:

Low iron media, screen 1 of 1 ( 98% confidence (FDR = 0.017))

Note: FDR indicates the likelihood that a particular genotype-phenotype relationship is incorrect. Not all mutants in a particular gene show the same phenotype. Please see the mutant pages for each mutant's phenotypes. Complementation is needed to definitively prove a genotype-phenotype link. These data are from a pooled phenotyping experiment.

If you reference the phenotypic data above in a manuscript, please cite: Fauser et al. 2022 Nature Genetics.

Gene: Cre12.g531400 (Genome version: v5.3)

Overview

Common name:	NPH4
Defline:	Nephrocystin-4-like protein
Description:
Synonyms:	Cre12.g531400,g13078
Chromosome:	chromosome_12

Protein Localization

We did not create a plasmid for this gene.

Protein-Protein Interactions

We did not determine any protein-protein interactions for this gene.

Mutant Strains

Insertion Junction	Mutant Strain	Orientation	Insertion Junction Feature	Confidence (%)
LMJ.SG0182.020074_1	LMJ.SG0182.020074	sense	CDS	75

Gene Annotations

PFAM:	PF00612
PANTHER:
KEGG_ec:
KEGG_orthology:
KOG:
Gene ontology terms::
Best arabidopsis TAIR name:
Best arabidopsis TAIR symbol:
Best arabidopsis TAIR defline:
Phytozome Locus Page

Phenotypes

Our phenotype screens did not find statistically significant results for this gene.