Gene: Cre12.g531400

Overview

Common name:NPHP4,NPH4,POC10
Defline:(1 of 1) K16478 - nephrocystin-4 (NPHP4); Proteome of centriole protein 10
Description:Found in basal body proteome; Mammalian homolog is NPHP-4, also known as nephroretinin, gene mutated in Senior-Loken syndrome
Synonyms:NPH4,g13078.t1,NPHP4
Chromosome:chromosome 12

Protein Localization

We did not create a plasmid for this gene.

Protein-Protein Interactions

We did not determine any protein-protein interactions for this gene.

Mutant Strains

Insertion Junction Mutant Strain Insertion Junction Feature Confidence (%) Genome Version
CLIP2.016763_1 CLIP2.016763 CDS 80 6.1
CLIP2.016763_2 CLIP2.016763 CDS 80 6.1
CLIP2.017144_4 CLIP2.017144 intron 63 6.1
CLIP2.024464_3 CLIP2.024464 intron 80 6.1
CLIP2.024464_4 CLIP2.024464 intron 80 6.1
CLIP2.030922_1 CLIP2.030922 CDS 80 6.1
CLIP2.030922_2 CLIP2.030922 CDS 80 6.1
CLIP2.050253_1 CLIP2.050253 CDS 80 6.1
CLIP2.050253_2 CLIP2.050253 CDS 80 6.1
CLIP2.053696_1 CLIP2.053696 CDS 80 6.1
CLIP2.053696_2 CLIP2.053696 CDS 80 6.1
CLIP2.077444_2 CLIP2.077444 CDS 40 6.1
LMJ.RY0402.039169_1 LMJ.RY0402.039169 intron 73 5.5
LMJ.RY0402.042518_1 LMJ.RY0402.042518 CDS 73 5.5
LMJ.RY0402.085956_1 LMJ.RY0402.085956 CDS 73 5.5
LMJ.RY0402.090938_1 LMJ.RY0402.090938 CDS 58 5.5
LMJ.RY0402.128073_1 LMJ.RY0402.128073 CDS 95 5.5
LMJ.RY0402.128073_2 LMJ.RY0402.128073 CDS 95 5.5
LMJ.RY0402.141013_1 LMJ.RY0402.141013 3'UTR 73 5.5
LMJ.RY0402.143356_1 LMJ.RY0402.143356 CDS 73 5.5
LMJ.RY0402.164899_1 LMJ.RY0402.164899 CDS 73 5.5
LMJ.RY0402.166074_2 LMJ.RY0402.166074 CDS 73 5.5
LMJ.RY0402.177769_2 LMJ.RY0402.177769 CDS 73 5.5
LMJ.RY0402.186717_1 LMJ.RY0402.186717 CDS 73 5.5
LMJ.RY0402.189745_1 LMJ.RY0402.189745 intron 73 5.5
LMJ.RY0402.235220_1 LMJ.RY0402.235220 intron 95 5.5
LMJ.RY0402.235220_2 LMJ.RY0402.235220 intron 95 5.5
LMJ.RY0402.235507_2 LMJ.RY0402.235507 intron 73 5.5
LMJ.RY0402.250685_1 LMJ.RY0402.250685 CDS 95 5.5
LMJ.RY0402.250685_2 LMJ.RY0402.250685 CDS 95 5.5
LMJ.SG0182.020074_1 LMJ.SG0182.020074 CDS 75 5.3

Gene Annotations

PFAM:PF00612
PANTHER: PTHR31043 PTHR31043:SF3
KEGG_ec:
KEGG_orthology:K16478
KOG:
Gene ontology terms::GO:0005515, GO:0005856, GO:0031513, GO:0090090
Best arabidopsis TAIR name:
Best arabidopsis TAIR symbol:
Best arabidopsis TAIR defline:
Phytozome Locus Page

Phenotypes

Mutants in this gene exhibit a phenotype under the following conditions:

Low iron media, screen 1 of 1 ( 98% confidence (FDR = 0.017))

Note: FDR indicates the likelihood that a particular genotype-phenotype relationship is incorrect. Not all mutants in a particular gene show the same phenotype. Please see the mutant pages for each mutant's phenotypes. Complementation is needed to definitively prove a genotype-phenotype link. These data are from a pooled phenotyping experiment.

If you reference the phenotypic data above in a manuscript, please cite: Fauser et al. 2022 Nature Genetics.