Gene: Cre01.g002787

Overview

Common name:	SRR24A,SRR24
Defline:	(1 of 1) PF00059//PF00530//PF00704//PF03762 - Lectin C-type domain (Lectin_C) // Scavenger receptor cysteine-rich domain (SRCR) // Glycosyl hydrolases family 18 (Glyco_hydro_18) // Vitelline membrane outer layer protein I (VOMI) (VOMI); Scavenger receptor cysteine-rich protein
Description:	Scavenger receptor cysteine-rich protein with multiple C-type lectin domains and a glycoside hydrolase family 18 domain. Very large protein. Part of a group of 4 homologous proteins; null-allele passenger mutation was isolated (PMID 29743196)
Synonyms:	g66.t1,SRR24A,SRR24,Cre01.g002800.t1.3
Chromosome:	chromosome 1

Protein Localization

We did not create a plasmid for this gene.

Protein-Protein Interactions

We did not determine any protein-protein interactions for this gene.

Mutant Strains

Insertion Junction	Mutant Strain	Insertion Junction Feature	Confidence (%)	Genome Version
CLIP2.015752_1	CLIP2.015752	intron	80	6.1
CLIP2.015752_2	CLIP2.015752	intron	80	6.1
CLIP2.016478_1	CLIP2.016478	intron	80	6.1
CLIP2.016478_2	CLIP2.016478	intron	80	6.1
CLIP2.021932_1	CLIP2.021932	intron	80	6.1
CLIP2.021932_2	CLIP2.021932	intron	80	6.1
CLIP2.025343_1	CLIP2.025343	intron	80	6.1
CLIP2.025343_2	CLIP2.025343	intron	80	6.1
CLIP2.040967_1	CLIP2.040967	intron	80	6.1
CLIP2.040967_2	CLIP2.040967	intron	80	6.1
CLIP2.064452_1	CLIP2.064452	intron	80	6.1
CLIP2.064452_2	CLIP2.064452	intron	80	6.1
CLIP2.065675_1	CLIP2.065675	intron	80	6.1
LMJ.RY0402.041930_1	LMJ.RY0402.041930	CDS/intron	95	5.5
LMJ.RY0402.041930_2	LMJ.RY0402.041930	CDS/intron	95	5.5
LMJ.RY0402.053464_1	LMJ.RY0402.053464	intron	73	5.5
LMJ.RY0402.066963_1	LMJ.RY0402.066963	intron	58	5.5
LMJ.RY0402.066963_2	LMJ.RY0402.066963	intron	58	5.5
LMJ.RY0402.078934_1	LMJ.RY0402.078934	CDS	73	5.5
LMJ.RY0402.101489_1	LMJ.RY0402.101489	intron	73	5.5
LMJ.RY0402.142273_1	LMJ.RY0402.142273	intron	95	5.5
LMJ.RY0402.142273_2	LMJ.RY0402.142273	intron	95	5.5
LMJ.RY0402.150233_1	LMJ.RY0402.150233	CDS	73	5.5
LMJ.RY0402.165102_1	LMJ.RY0402.165102	intron	95	5.5
LMJ.RY0402.165102_2	LMJ.RY0402.165102	intron	95	5.5
LMJ.RY0402.172449_1	LMJ.RY0402.172449	intron	58	5.5
LMJ.RY0402.172449_2	LMJ.RY0402.172449	CDS	73	5.5
LMJ.RY0402.182303_1	LMJ.RY0402.182303	CDS	58	5.5
LMJ.RY0402.211527_1	LMJ.RY0402.211527	intron	95	5.5
LMJ.RY0402.211527_2	LMJ.RY0402.211527	intron	95	5.5
LMJ.RY0402.229619_1	LMJ.RY0402.229619	intron	95	5.5
LMJ.RY0402.229619_2	LMJ.RY0402.229619	intron	95	5.5
LMJ.RY0402.247591_1	LMJ.RY0402.247591	CDS	73	5.5

Gene Annotations

PFAM:	PF00059, PF00530, PF00704, PF03762
PANTHER:	PTHR11177 PTHR11177:SF157
KEGG_ec:
KEGG_orthology:
KOG:	KOG2806
Gene ontology terms::	GO:0004553, GO:0004568, GO:0005044, GO:0005975, GO:0006032, GO:0016020
Best arabidopsis TAIR name:	AT4G19800.1
Best arabidopsis TAIR symbol:
Best arabidopsis TAIR defline:	Glycosyl hydrolase family protein with chitinase insertion domai
Phytozome Locus Page

Phenotypes

Mutants in this gene exhibit a phenotype under the following conditions:

Paromomycin, screen 1 of 6 ( 81% confidence (FDR = 0.19))

Paromomycin, screen 2 of 6 ( 93% confidence (FDR = 0.066))

Paromomycin, screen 3 of 6 ( 99% confidence (FDR = 0.0051))

Paromomycin, screen 4 of 6 ( 86% confidence (FDR = 0.14))

Paromomycin, screen 5 of 6 ( 71% confidence (FDR = 0.29))

Note: FDR indicates the likelihood that a particular genotype-phenotype relationship is incorrect. Not all mutants in a particular gene show the same phenotype. Please see the mutant pages for each mutant's phenotypes. Complementation is needed to definitively prove a genotype-phenotype link. These data are from a pooled phenotyping experiment.

If you reference the phenotypic data above in a manuscript, please cite: Fauser et al. 2022 Nature Genetics.