Gene: Cre06.g270850

Overview

Common name:	SRH12
Defline:	(1 of 1) K10841 - DNA excision repair protein ERCC-6 (ERCC6, CSB, RAD26); SNF2-related DNA/RNA helicase
Description:	Putative SNF2/RAD54 family DNA repair and recombination protein, ChromDB CHR3411
Synonyms:	Cre06.g270850.t1.1,SRH12,g6077.t1
Chromosome:	chromosome 6

Protein Localization

We did not create a plasmid for this gene.

Protein-Protein Interactions

We did not determine any protein-protein interactions for this gene.

Mutant Strains

Insertion Junction	Mutant Strain	Insertion Junction Feature	Confidence (%)	Genome Version
CLIP2.010439_1	CLIP2.010439	intron	80	6.1
CLIP2.010439_2	CLIP2.010439	intron	80	6.1
CLIP2.014184_1	CLIP2.014184	CDS	80	6.1
CLIP2.014184_2	CLIP2.014184	CDS	80	6.1
CLIP2.032556_1	CLIP2.032556	intron	80	6.1
CLIP2.032556_2	CLIP2.032556	intron	80	6.1
CLIP2.035383_1	CLIP2.035383	CDS	80	6.1
CLIP2.035383_2	CLIP2.035383	CDS	80	6.1
CLIP2.046662_1	CLIP2.046662	CDS	80	6.1
CLIP2.046662_2	CLIP2.046662	CDS	80	6.1
CLIP2.051668_1	CLIP2.051668	CDS	80	6.1
CLIP2.053353_1	CLIP2.053353	intron	80	6.1
CLIP2.059493_1	CLIP2.059493	5'UTR	80	6.1
CLIP2.060612_1	CLIP2.060612	5'UTR	80	6.1
CLIP2.060612_2	CLIP2.060612	5'UTR	80	6.1
CLIP2.073406_1	CLIP2.073406	CDS	63	6.1
CLIP2.075424_1	CLIP2.075424	5'UTR	80	6.1
CLIP2.077211_1	CLIP2.077211	CDS	80	6.1
CLIP2.077211_2	CLIP2.077211	CDS	80	6.1
LMJ.RY0402.057389_1	LMJ.RY0402.057389	3'UTR	95	5.5
LMJ.RY0402.057389_2	LMJ.RY0402.057389	3'UTR	95	5.5
LMJ.RY0402.096653_1	LMJ.RY0402.096653	CDS	95	5.5
LMJ.RY0402.096653_2	LMJ.RY0402.096653	CDS	95	5.5
LMJ.RY0402.104687_1	LMJ.RY0402.104687	3'UTR	95	5.5
LMJ.RY0402.104687_2	LMJ.RY0402.104687	3'UTR	95	5.5
LMJ.RY0402.106655_1	LMJ.RY0402.106655	3'UTR	95	5.5
LMJ.RY0402.106655_2	LMJ.RY0402.106655	3'UTR	95	5.5
LMJ.RY0402.111509_1	LMJ.RY0402.111509	intron	73	5.5
LMJ.RY0402.116398_1	LMJ.RY0402.116398	intron	73	5.5
LMJ.RY0402.146119_1	LMJ.RY0402.146119	intron	73	5.5
LMJ.RY0402.154029_1	LMJ.RY0402.154029	3'UTR	73	5.5
LMJ.RY0402.170706_1	LMJ.RY0402.170706	intron	73	5.5
LMJ.RY0402.180025_1	LMJ.RY0402.180025	intron	73	5.5
LMJ.RY0402.185677_1	LMJ.RY0402.185677	intron	73	5.5
LMJ.RY0402.217185_1	LMJ.RY0402.217185	intron	58	5.5
LMJ.RY0402.238538_1	LMJ.RY0402.238538	3'UTR	95	5.5
LMJ.RY0402.238538_2	LMJ.RY0402.238538	3'UTR	95	5.5
LMJ.RY0402.246123_1	LMJ.RY0402.246123	CDS	73	5.5
LMJ.RY0402.256933_1	LMJ.RY0402.256933	CDS	95	5.5
LMJ.RY0402.256933_2	LMJ.RY0402.256933	intron	95	5.5

Gene Annotations

PFAM:	PF00176, PF00271
PANTHER:	PTHR10799 PTHR10799:SF679
KEGG_ec:	EC:3.6.4.12
KEGG_orthology:	K10841
KOG:	KOG0389
Gene ontology terms::	GO:0005524
Best arabidopsis TAIR name:	AT2G18760
Best arabidopsis TAIR symbol:	CHR8
Best arabidopsis TAIR defline:	chromatin remodeling 8
Phytozome Locus Page

Phenotypes

Mutants in this gene exhibit a phenotype under the following conditions:

Methyl methanesulfonate, screen 1 of 4 ( 99% confidence (FDR = 2.8e-05))

Methyl methanesulfonate, screen 2 of 4 ( 99% confidence (FDR = 0.00098))

Methyl methanesulfonate, screen 3 of 4 ( 99% confidence (FDR = 6.9e-07))

Methyl methanesulfonate, screen 4 of 4 ( 99% confidence (FDR = 1.3e-05))

UV radiation, screen 2 of 2 ( 98% confidence (FDR = 0.02))

Note: FDR indicates the likelihood that a particular genotype-phenotype relationship is incorrect. Not all mutants in a particular gene show the same phenotype. Please see the mutant pages for each mutant's phenotypes. Complementation is needed to definitively prove a genotype-phenotype link. These data are from a pooled phenotyping experiment.

If you reference the phenotypic data above in a manuscript, please cite: Fauser et al. 2022 Nature Genetics.