Gene: Cre10.g441650

Overview

Common name:
Defline:(1 of 1) PF06650//PF16908 - SHR-binding domain of vacuolar-sorting associated protein 13 (SHR-BD) // Vacuolar sorting-associated protein 13, N-terminal (VPS13)
Description:
Synonyms:g10867.t1
Chromosome:chromosome 10

Protein Localization

We did not create a plasmid for this gene.

Protein-Protein Interactions

We did not determine any protein-protein interactions for this gene.

Mutant Strains

Insertion Junction Mutant Strain Insertion Junction Feature Confidence (%) Genome Version
CLIP2.008871_1 CLIP2.008871 CDS 80 6.1
CLIP2.008871_2 CLIP2.008871 CDS 80 6.1
CLIP2.015116_1 CLIP2.015116 CDS 80 6.1
CLIP2.015116_2 CLIP2.015116 CDS 80 6.1
CLIP2.028672_1 CLIP2.028672 CDS 80 6.1
CLIP2.028672_2 CLIP2.028672 CDS 80 6.1
CLIP2.043165_1 CLIP2.043165 CDS 80 6.1
CLIP2.043165_2 CLIP2.043165 CDS 80 6.1
CLIP2.044278_1 CLIP2.044278 CDS 80 6.1
CLIP2.044278_2 CLIP2.044278 CDS 80 6.1
CLIP2.047245_3 CLIP2.047245 CDS 80 6.1
LMJ.RY0402.041015_1 LMJ.RY0402.041015 CDS 95 5.5
LMJ.RY0402.041015_2 LMJ.RY0402.041015 CDS 95 5.5
LMJ.RY0402.041015_3 LMJ.RY0402.041015 CDS 95 5.5
LMJ.RY0402.057786_1 LMJ.RY0402.057786 intron 95 5.5
LMJ.RY0402.057786_2 LMJ.RY0402.057786 CDS 95 5.5
LMJ.RY0402.059381_1 LMJ.RY0402.059381 CDS 73 5.5
LMJ.RY0402.063753_1 LMJ.RY0402.063753 CDS 95 5.5
LMJ.RY0402.063753_2 LMJ.RY0402.063753 CDS 95 5.5
LMJ.RY0402.073293_2 LMJ.RY0402.073293 intron 73 5.5
LMJ.RY0402.093329_2 LMJ.RY0402.093329 CDS 73 5.5
LMJ.RY0402.104999_1 LMJ.RY0402.104999 intron 95 5.5
LMJ.RY0402.104999_2 LMJ.RY0402.104999 intron 95 5.5
LMJ.RY0402.109512_1 LMJ.RY0402.109512 CDS 95 5.5
LMJ.RY0402.109512_2 LMJ.RY0402.109512 CDS 95 5.5
LMJ.RY0402.111729_1 LMJ.RY0402.111729 CDS 73 5.5
LMJ.RY0402.115625_1 LMJ.RY0402.115625 CDS 95 5.5
LMJ.RY0402.115625_2 LMJ.RY0402.115625 CDS 95 5.5
LMJ.RY0402.121552_1 LMJ.RY0402.121552 intron 95 5.5
LMJ.RY0402.121552_2 LMJ.RY0402.121552 intron 95 5.5
LMJ.RY0402.140139_1 LMJ.RY0402.140139 CDS 95 5.5
LMJ.RY0402.140139_2 LMJ.RY0402.140139 CDS 95 5.5
LMJ.RY0402.167591_1 LMJ.RY0402.167591 CDS 73 5.5
LMJ.RY0402.172652_1 LMJ.RY0402.172652 CDS 95 5.5
LMJ.RY0402.172652_2 LMJ.RY0402.172652 CDS 95 5.5
LMJ.RY0402.213722_1 LMJ.RY0402.213722 intron 95 5.5
LMJ.RY0402.213722_2 LMJ.RY0402.213722 intron 95 5.5
LMJ.RY0402.213782_2 LMJ.RY0402.213782 CDS 73 5.5
LMJ.RY0402.215846_1 LMJ.RY0402.215846 CDS 58 5.5
LMJ.RY0402.223619_1 LMJ.RY0402.223619 CDS 95 5.5
LMJ.RY0402.223619_2 LMJ.RY0402.223619 CDS 95 5.5
LMJ.RY0402.226666_1 LMJ.RY0402.226666 intron 95 5.5
LMJ.RY0402.226666_2 LMJ.RY0402.226666 intron 95 5.5
LMJ.RY0402.254223_1 LMJ.RY0402.254223 3'UTR 95 5.5
LMJ.SG0182.000299_1 LMJ.SG0182.000299 3'UTR 75 5.3
LMJ.SG0182.002935_1 LMJ.SG0182.002935 CDS 75 5.3
LMJ.SG0182.016679_1 LMJ.SG0182.016679 CDS 75 5.3

Gene Annotations

PFAM:PF06650, PF16908
PANTHER: PTHR16166 PTHR16166:SF93
KEGG_ec:
KEGG_orthology:
KOG:
Gene ontology terms::GO:0008104
Best arabidopsis TAIR name:
Best arabidopsis TAIR symbol:
Best arabidopsis TAIR defline:
Phytozome Locus Page

Phenotypes

Mutants in this gene exhibit a phenotype under the following conditions:

Low pH, screen 3 of 3 ( 99% confidence (FDR = 7.5e-17))
Paromomycin, screen 3 of 6 ( 78% confidence (FDR = 0.22))
Paromomycin, screen 5 of 6 ( 89% confidence (FDR = 0.11))

Note: FDR indicates the likelihood that a particular genotype-phenotype relationship is incorrect. Not all mutants in a particular gene show the same phenotype. Please see the mutant pages for each mutant's phenotypes. Complementation is needed to definitively prove a genotype-phenotype link. These data are from a pooled phenotyping experiment.

If you reference the phenotypic data above in a manuscript, please cite: Fauser et al. 2022 Nature Genetics.