CLiP

Gene: Cre12.g500550 (Genome version: v5.5)

Overview

Common name:
Defline:
Description:
Synonyms:	g12565.t1,Cre12.g500550.t1.1
Chromosome:	chromosome_12

Protein Localization

We did not create a plasmid for this gene.

Protein-Protein Interactions

We did not determine any protein-protein interactions for this gene.

Mutant Strains

Insertion Junction	Mutant Strain	Orientation	Insertion Junction Feature	Confidence (%)
LMJ.RY0402.040262_1	LMJ.RY0402.040262	antisense	CDS	95
LMJ.RY0402.040262_2	LMJ.RY0402.040262	antisense	CDS	95
LMJ.RY0402.051867_1	LMJ.RY0402.051867	sense	CDS	73
LMJ.RY0402.053151_1	LMJ.RY0402.053151	antisense	CDS	95
LMJ.RY0402.053151_2	LMJ.RY0402.053151	antisense	intron	95
LMJ.RY0402.058800_4	LMJ.RY0402.058800	antisense	5'UTR	58
LMJ.RY0402.077578_1	LMJ.RY0402.077578	sense	intron	58
LMJ.RY0402.080322_1	LMJ.RY0402.080322	sense	5'UTR	73
LMJ.RY0402.081846_2	LMJ.RY0402.081846	sense	5'UTR	73
LMJ.RY0402.082010_1	LMJ.RY0402.082010	antisense	intron	95
LMJ.RY0402.082010_2	LMJ.RY0402.082010	antisense	intron	95
LMJ.RY0402.087997_2	LMJ.RY0402.087997	sense	intron	73
LMJ.RY0402.090923_1	LMJ.RY0402.090923	antisense	3'UTR	58
LMJ.RY0402.092347_1	LMJ.RY0402.092347	antisense	5'UTR	73
LMJ.RY0402.094887_1	LMJ.RY0402.094887	antisense	5'UTR	73
LMJ.RY0402.101217_1	LMJ.RY0402.101217	antisense	CDS	95
LMJ.RY0402.101217_2	LMJ.RY0402.101217	antisense	CDS	95
LMJ.RY0402.104608_2	LMJ.RY0402.104608	sense	CDS	73
LMJ.RY0402.105086_1	LMJ.RY0402.105086	sense	CDS	73
LMJ.RY0402.108183_1	LMJ.RY0402.108183	antisense	3'UTR	73
LMJ.RY0402.114532_1	LMJ.RY0402.114532	antisense	CDS	73
LMJ.RY0402.115138_1	LMJ.RY0402.115138	antisense	5'UTR	95
LMJ.RY0402.115138_2	LMJ.RY0402.115138	antisense	intron	95
LMJ.RY0402.118097_2	LMJ.RY0402.118097	sense	5'UTR	73
LMJ.RY0402.120871_1	LMJ.RY0402.120871	antisense	5'UTR	73
LMJ.RY0402.120954_1	LMJ.RY0402.120954	antisense	5'UTR	58
LMJ.RY0402.120954_2	LMJ.RY0402.120954	antisense	intron	58
LMJ.RY0402.122465_3	LMJ.RY0402.122465	sense	5'UTR	73
LMJ.RY0402.122766_2	LMJ.RY0402.122766	antisense	5'UTR	73
LMJ.RY0402.123330_3	LMJ.RY0402.123330	antisense	5'UTR	73
LMJ.RY0402.123580_2	LMJ.RY0402.123580	antisense	5'UTR	73
LMJ.RY0402.124717_1	LMJ.RY0402.124717	antisense	intron	58
LMJ.RY0402.125793_1	LMJ.RY0402.125793	sense	5'UTR	95
LMJ.RY0402.125793_2	LMJ.RY0402.125793	sense	5'UTR	95
LMJ.RY0402.129596_1	LMJ.RY0402.129596	sense	intron	73
LMJ.RY0402.131327_1	LMJ.RY0402.131327	sense	3'UTR	95
LMJ.RY0402.134376_1	LMJ.RY0402.134376	sense	intron	73
LMJ.RY0402.137841_1	LMJ.RY0402.137841	sense	CDS	95
LMJ.RY0402.137841_2	LMJ.RY0402.137841	sense	CDS	95
LMJ.RY0402.139441_2	LMJ.RY0402.139441	antisense	5'UTR	58
LMJ.RY0402.139637_1	LMJ.RY0402.139637	sense	5'UTR	73
LMJ.RY0402.140063_1	LMJ.RY0402.140063	sense	5'UTR	95
LMJ.RY0402.140063_2	LMJ.RY0402.140063	antisense	5'UTR	95
LMJ.RY0402.144765_2	LMJ.RY0402.144765	antisense	3'UTR	73
LMJ.RY0402.145868_1	LMJ.RY0402.145868	sense	intron	73
LMJ.RY0402.146073_3	LMJ.RY0402.146073	sense	3'UTR	73
LMJ.RY0402.147348_1	LMJ.RY0402.147348	antisense	3'UTR	95
LMJ.RY0402.147348_2	LMJ.RY0402.147348	antisense	3'UTR	95
LMJ.RY0402.149040_1	LMJ.RY0402.149040	antisense	5'UTR	73
LMJ.RY0402.149958_3	LMJ.RY0402.149958	sense	intron	73
LMJ.RY0402.153391_2	LMJ.RY0402.153391	antisense	3'UTR	95
LMJ.RY0402.153391_3	LMJ.RY0402.153391	sense	3'UTR	95
LMJ.RY0402.154130_1	LMJ.RY0402.154130	sense	intron	58
LMJ.RY0402.155740_1	LMJ.RY0402.155740	antisense	CDS	73
LMJ.RY0402.160870_2	LMJ.RY0402.160870	sense	5'UTR	95
LMJ.RY0402.160870_3	LMJ.RY0402.160870	sense	5'UTR	95
LMJ.RY0402.164447_2	LMJ.RY0402.164447	antisense	intron	95
LMJ.RY0402.164447_3	LMJ.RY0402.164447	sense	CDS	95
LMJ.RY0402.164641_1	LMJ.RY0402.164641	antisense	3'UTR	73
LMJ.RY0402.165895_1	LMJ.RY0402.165895	antisense	3'UTR	73
LMJ.RY0402.166496_2	LMJ.RY0402.166496	sense	CDS	58
LMJ.RY0402.167169_1	LMJ.RY0402.167169	antisense	CDS	95
LMJ.RY0402.167169_2	LMJ.RY0402.167169	sense	intron	95
LMJ.RY0402.168743_3	LMJ.RY0402.168743	sense	intron	95
LMJ.RY0402.168743_4	LMJ.RY0402.168743	sense	intron	95
LMJ.RY0402.172495_1	LMJ.RY0402.172495	antisense	5'UTR	73
LMJ.RY0402.174255_1	LMJ.RY0402.174255	antisense	CDS	95
LMJ.RY0402.174255_2	LMJ.RY0402.174255	antisense	CDS	95
LMJ.RY0402.176545_1	LMJ.RY0402.176545	antisense	CDS	95
LMJ.RY0402.176545_2	LMJ.RY0402.176545	antisense	CDS	95
LMJ.RY0402.187571_2	LMJ.RY0402.187571	sense	intron	95
LMJ.RY0402.187571_3	LMJ.RY0402.187571	sense	intron	95
LMJ.RY0402.190148_2	LMJ.RY0402.190148	antisense	5'UTR	58
LMJ.RY0402.194253_2	LMJ.RY0402.194253	antisense	5'UTR	58
LMJ.RY0402.194407_1	LMJ.RY0402.194407	sense	intron	58
LMJ.RY0402.200140_1	LMJ.RY0402.200140	sense	5'UTR	95
LMJ.RY0402.200140_2	LMJ.RY0402.200140	sense	5'UTR	95
LMJ.RY0402.203955_1	LMJ.RY0402.203955	antisense	CDS	58
LMJ.RY0402.204973_1	LMJ.RY0402.204973	antisense	3'UTR	73
LMJ.RY0402.204973_2	LMJ.RY0402.204973	antisense	3'UTR	58
LMJ.RY0402.205479_3	LMJ.RY0402.205479	sense	5'UTR	73
LMJ.RY0402.208399_2	LMJ.RY0402.208399	sense	5'UTR	73
LMJ.RY0402.216864_1	LMJ.RY0402.216864	sense	5'UTR	95
LMJ.RY0402.216864_2	LMJ.RY0402.216864	sense	5'UTR	95
LMJ.RY0402.220865_1	LMJ.RY0402.220865	sense	CDS	95
LMJ.RY0402.220865_2	LMJ.RY0402.220865	sense	CDS	95
LMJ.RY0402.223071_1	LMJ.RY0402.223071	antisense	intron	73
LMJ.RY0402.223588_1	LMJ.RY0402.223588	sense	3'UTR	73
LMJ.RY0402.225412_2	LMJ.RY0402.225412	antisense	5'UTR	95
LMJ.RY0402.225412_3	LMJ.RY0402.225412	sense	5'UTR	95
LMJ.RY0402.227127_3	LMJ.RY0402.227127	sense	5'UTR	73
LMJ.RY0402.230181_1	LMJ.RY0402.230181	sense	5'UTR	95
LMJ.RY0402.230181_2	LMJ.RY0402.230181	sense	3'UTR	58
LMJ.RY0402.230415_2	LMJ.RY0402.230415	antisense	5'UTR	95
LMJ.RY0402.230415_3	LMJ.RY0402.230415	sense	5'UTR	95
LMJ.RY0402.231043_1	LMJ.RY0402.231043	sense	intron	95
LMJ.RY0402.231043_2	LMJ.RY0402.231043	sense	intron	95
LMJ.RY0402.235278_1	LMJ.RY0402.235278	sense	CDS	95
LMJ.RY0402.235278_2	LMJ.RY0402.235278	sense	CDS	95
LMJ.RY0402.235558_3	LMJ.RY0402.235558	antisense	5'UTR	73
LMJ.RY0402.235698_2	LMJ.RY0402.235698	sense	5'UTR	73
LMJ.RY0402.236425_2	LMJ.RY0402.236425	sense	5'UTR	73
LMJ.RY0402.237053_2	LMJ.RY0402.237053	antisense	3'UTR	73
LMJ.RY0402.238492_1	LMJ.RY0402.238492	antisense	intron	73
LMJ.RY0402.243070_1	LMJ.RY0402.243070	sense	5'UTR	73
LMJ.RY0402.243888_2	LMJ.RY0402.243888	sense	3'UTR	95
LMJ.RY0402.243888_3	LMJ.RY0402.243888	sense	3'UTR	95
LMJ.RY0402.244045_3	LMJ.RY0402.244045	antisense	5'UTR	73
LMJ.RY0402.252037_1	LMJ.RY0402.252037	antisense	5'UTR	73
LMJ.RY0402.252360_3	LMJ.RY0402.252360	antisense	5'UTR	95
LMJ.RY0402.252360_4	LMJ.RY0402.252360	antisense	intron	95
LMJ.RY0402.252747_1	LMJ.RY0402.252747	antisense	5'UTR	73
LMJ.RY0402.254766_3	LMJ.RY0402.254766	antisense	5'UTR	73
LMJ.RY0402.255081_4	LMJ.RY0402.255081	sense	5'UTR	73

Gene Annotations

PFAM:	PF00092
PANTHER:	PTHR13789 PTHR13789:SF63
KEGG_ec:
KEGG_orthology:
KOG:
Gene ontology terms::	GO:0005515
Best arabidopsis TAIR name:	AT3G54780.1
Best arabidopsis TAIR symbol:
Best arabidopsis TAIR defline:	Zinc finger (C3HC4-type RING finger) family protein
Phytozome Locus Page

Phenotypes

Our phenotype screens did not find statistically significant results for this gene.

Gene: Cre12.g500550 (Genome version: v5.3)

Overview

Common name:
Defline:
Description:
Synonyms:	Cre12.g500550,g12565
Chromosome:	chromosome_12

Protein Localization

We did not create a plasmid for this gene.

Protein-Protein Interactions

We did not determine any protein-protein interactions for this gene.

Mutant Strains

Insertion Junction	Mutant Strain	Orientation	Insertion Junction Feature	Confidence (%)
LMJ.SG0182.000597_1	LMJ.SG0182.000597	antisense	intron	75
LMJ.SG0182.011830_1	LMJ.SG0182.011830	antisense	intron	75

Gene Annotations

PFAM:	PF00092
PANTHER:	PTHR10166 PTHR10166:SF27
KEGG_ec:
KEGG_orthology:
KOG:
Gene ontology terms::
Best arabidopsis TAIR name:	AT3G54780.1
Best arabidopsis TAIR symbol:
Best arabidopsis TAIR defline:	Zinc finger (C3HC4-type RING finger) family protein
Phytozome Locus Page

Phenotypes

Our phenotype screens did not find statistically significant results for this gene.