Gene: Cre14.g632050

Overview

Common name:POB25,RPG1,RPGRIP1
Defline:Retinitis pigmentosa GTPase regulator-interacting protein 1; (1 of 1) PF11618 - First C2 domain of RPGR-interacting protein 1 (C2-C2_1)
Description:Found in basal body proteome as POB25; Similar to X-linked retinitis pigmentosa GTPase regulator-interacting protein 1 (RPGRIP1) in humans
Synonyms:RPGRIP1,POB25,Cre14.g632050.t1.1,g15231.t1
Chromosome:chromosome 14

Protein Localization

We did not create a plasmid for this gene.

Protein-Protein Interactions

We did not determine any protein-protein interactions for this gene.

Mutant Strains

Insertion Junction Mutant Strain Insertion Junction Feature Confidence (%) Genome Version
CLIP2.000674_2 CLIP2.000674 5'UTR 80 6.1
CLIP2.000674_3 CLIP2.000674 5'UTR 80 6.1
CLIP2.016421_3 CLIP2.016421 intron 80 6.1
CLIP2.024071_1 CLIP2.024071 intron 80 6.1
CLIP2.027898_1 CLIP2.027898 intron 80 6.1
CLIP2.027898_2 CLIP2.027898 intron 80 6.1
CLIP2.040332_1 CLIP2.040332 intron 80 6.1
CLIP2.040332_2 CLIP2.040332 intron 80 6.1
CLIP2.048166_2 CLIP2.048166 intron 80 6.1
CLIP2.048166_3 CLIP2.048166 intron 80 6.1
CLIP2.053774_1 CLIP2.053774 intron 80 6.1
CLIP2.053774_2 CLIP2.053774 intron 80 6.1
LMJ.RY0402.077578_2 LMJ.RY0402.077578 intron 73 5.5
LMJ.RY0402.090713_1 LMJ.RY0402.090713 3'UTR 73 5.5
LMJ.RY0402.106619_1 LMJ.RY0402.106619 CDS 58 5.5
LMJ.RY0402.117689_3 LMJ.RY0402.117689 intron 58 5.5
LMJ.RY0402.118749_1 LMJ.RY0402.118749 intron 95 5.5
LMJ.RY0402.118749_2 LMJ.RY0402.118749 intron 95 5.5
LMJ.RY0402.119818_1 LMJ.RY0402.119818 3'UTR 73 5.5
LMJ.RY0402.128081_1 LMJ.RY0402.128081 intron 95 5.5
LMJ.RY0402.128081_2 LMJ.RY0402.128081 intron 95 5.5
LMJ.RY0402.140852_1 LMJ.RY0402.140852 3'UTR 95 5.5
LMJ.RY0402.140852_2 LMJ.RY0402.140852 3'UTR 95 5.5
LMJ.RY0402.149177_1 LMJ.RY0402.149177 intron 73 5.5
LMJ.RY0402.165478_1 LMJ.RY0402.165478 CDS 58 5.5
LMJ.RY0402.179025_2 LMJ.RY0402.179025 intron 73 5.5
LMJ.RY0402.180475_1 LMJ.RY0402.180475 CDS 95 5.5
LMJ.RY0402.180475_2 LMJ.RY0402.180475 CDS 95 5.5
LMJ.RY0402.194882_1 LMJ.RY0402.194882 intron 95 5.5
LMJ.RY0402.194882_2 LMJ.RY0402.194882 intron 95 5.5
LMJ.RY0402.207802_1 LMJ.RY0402.207802 CDS/intron 73 5.5
LMJ.RY0402.207802_2 LMJ.RY0402.207802 CDS/intron 73 5.5

Gene Annotations

PFAM:PF00168, PF11618, PF13499
PANTHER: PTHR14240
KEGG_ec:
KEGG_orthology:
KOG:KOG0027
Gene ontology terms::GO:0005509, GO:0005515
Best arabidopsis TAIR name:AT2G41100.1
Best arabidopsis TAIR symbol:ATCAL4,TCH3
Best arabidopsis TAIR defline:Calcium-binding EF hand family protein
Phytozome Locus Page

Phenotypes

Mutants in this gene exhibit a phenotype under the following conditions:

High pH, screen 2 of 2 ( 74% confidence (FDR = 0.26))

Note: FDR indicates the likelihood that a particular genotype-phenotype relationship is incorrect. Not all mutants in a particular gene show the same phenotype. Please see the mutant pages for each mutant's phenotypes. Complementation is needed to definitively prove a genotype-phenotype link. These data are from a pooled phenotyping experiment.

If you reference the phenotypic data above in a manuscript, please cite: Fauser et al. 2022 Nature Genetics.