Gene: Cre16.g682550

Overview

Common name:
Defline:(1 of 1) PF08016//PF08263//PF13855 - Polycystin cation channel (PKD_channel) // Leucine rich repeat N-terminal domain (LRRNT_2) // Leucine rich repeat (LRR_8)
Description:
Synonyms:g16451.t3
Chromosome:chromosome 16

Protein Localization

We did not create a plasmid for this gene.

Protein-Protein Interactions

We did not determine any protein-protein interactions for this gene.

Mutant Strains

Insertion Junction Mutant Strain Insertion Junction Feature Confidence (%) Genome Version
CLIP2.016842_1 CLIP2.016842 intron 80 6.1
CLIP2.016842_2 CLIP2.016842 intron 80 6.1
CLIP2.016908_1 CLIP2.016908 intron 80 6.1
CLIP2.016908_2 CLIP2.016908 intron 80 6.1
CLIP2.018969_3 CLIP2.018969 3'UTR 80 6.1
CLIP2.018969_4 CLIP2.018969 3'UTR 80 6.1
CLIP2.036306_1 CLIP2.036306 CDS 80 6.1
CLIP2.036306_2 CLIP2.036306 CDS 80 6.1
CLIP2.042006_2 CLIP2.042006 CDS 80 6.1
CLIP2.042006_3 CLIP2.042006 CDS 80 6.1
CLIP2.043513_1 CLIP2.043513 CDS 80 6.1
CLIP2.043513_2 CLIP2.043513 CDS 80 6.1
CLIP2.044953_4 CLIP2.044953 intron 63 6.1
LMJ.RY0402.057246_3 LMJ.RY0402.057246 CDS 73 5.5
LMJ.RY0402.057889_1 LMJ.RY0402.057889 CDS 95 5.5
LMJ.RY0402.057889_2 LMJ.RY0402.057889 CDS 95 5.5
LMJ.RY0402.066007_1 LMJ.RY0402.066007 CDS 73 5.5
LMJ.RY0402.066338_2 LMJ.RY0402.066338 CDS 73 5.5
LMJ.RY0402.066675_3 LMJ.RY0402.066675 3'UTR 73 5.5
LMJ.RY0402.067605_2 LMJ.RY0402.067605 CDS|outside_mRNA 73 5.5
LMJ.RY0402.070150_1 LMJ.RY0402.070150 CDS 58 5.5
LMJ.RY0402.075115_1 LMJ.RY0402.075115 intron 73 5.5
LMJ.RY0402.076870_2 LMJ.RY0402.076870 intron 58 5.5
LMJ.RY0402.085948_1 LMJ.RY0402.085948 CDS 95 5.5
LMJ.RY0402.085948_2 LMJ.RY0402.085948 CDS 95 5.5
LMJ.RY0402.088828_3 LMJ.RY0402.088828 CDS/intron|outside_mRNA 58 5.5
LMJ.RY0402.090747_2 LMJ.RY0402.090747 intron 73 5.5
LMJ.RY0402.091214_2 LMJ.RY0402.091214 intron 73 5.5
LMJ.RY0402.096248_1 LMJ.RY0402.096248 CDS 73 5.5
LMJ.RY0402.115523_1 LMJ.RY0402.115523 intron|outside_mRNA 95 5.5
LMJ.RY0402.115523_2 LMJ.RY0402.115523 intron|outside_mRNA 95 5.5
LMJ.RY0402.138697_3 LMJ.RY0402.138697 intron|outside_mRNA 73 5.5
LMJ.RY0402.165697_4 LMJ.RY0402.165697 intron 58 5.5
LMJ.RY0402.168970_1 LMJ.RY0402.168970 intron 95 5.5
LMJ.RY0402.168970_2 LMJ.RY0402.168970 intron 95 5.5
LMJ.RY0402.177660_1 LMJ.RY0402.177660 3'UTR 95 5.5
LMJ.RY0402.177660_2 LMJ.RY0402.177660 3'UTR 95 5.5
LMJ.RY0402.195191_1 LMJ.RY0402.195191 3'UTR 58 5.5
LMJ.RY0402.198331_1 LMJ.RY0402.198331 intron 73 5.5
LMJ.RY0402.205251_1 LMJ.RY0402.205251 5'UTR|outside_mRNA 95 5.5
LMJ.RY0402.205251_2 LMJ.RY0402.205251 5'UTR|outside_mRNA 95 5.5
LMJ.RY0402.208871_1 LMJ.RY0402.208871 CDS 58 5.5
LMJ.RY0402.228940_1 LMJ.RY0402.228940 intron 95 5.5
LMJ.RY0402.228940_2 LMJ.RY0402.228940 intron 95 5.5
LMJ.RY0402.235111_3 LMJ.RY0402.235111 intron 73 5.5
LMJ.RY0402.235318_2 LMJ.RY0402.235318 3'UTR 95 5.5
LMJ.RY0402.235318_3 LMJ.RY0402.235318 3'UTR 95 5.5
LMJ.SG0182.016545_2 LMJ.SG0182.016545 MULTIPLE_SPLICE_VARIANTS 75 5.3

Gene Annotations

PFAM:PF08016, PF08263, PF13855
PANTHER: PTHR27000
KEGG_ec:EC:2.7.11.1
KEGG_orthology:
KOG:
Gene ontology terms::GO:0005515
Best arabidopsis TAIR name:AT5G12940.1, AT4G20140.1
Best arabidopsis TAIR symbol:GSO1
Best arabidopsis TAIR defline:Leucine-rich repeat transmembrane protein kinase, Leucine-rich r
Phytozome Locus Page

Phenotypes

Mutants in this gene exhibit a phenotype under the following conditions:

Paromomycin, screen 1 of 6 ( 71% confidence (FDR = 0.29))
Paromomycin, screen 4 of 6 ( 88% confidence (FDR = 0.12))

Note: FDR indicates the likelihood that a particular genotype-phenotype relationship is incorrect. Not all mutants in a particular gene show the same phenotype. Please see the mutant pages for each mutant's phenotypes. Complementation is needed to definitively prove a genotype-phenotype link. These data are from a pooled phenotyping experiment.

If you reference the phenotypic data above in a manuscript, please cite: Fauser et al. 2022 Nature Genetics.