CLiP

Gene: Cre10.g451600 (Genome version: v5.5)

Overview

Common name:
Defline:
Description:
Synonyms:	g11096.t1, g11096.t3, g11096.t2
Chromosome:	chromosome_10

Protein Localization

We did not create a plasmid for this gene.

Protein-Protein Interactions

Bait ID	Bait Name	Prey ID	Prey Name	Reference
Cre16.g678000	CPL22	Cre10.g451600

Mutant Strains

Insertion Junction	Mutant Strain	Orientation	Insertion Junction Feature	Confidence (%)
LMJ.RY0402.045798_1	LMJ.RY0402.045798	antisense	CDS\|outside_mRNA	95
LMJ.RY0402.045798_2	LMJ.RY0402.045798	antisense	intron\|outside_mRNA	95
LMJ.RY0402.092781_2	LMJ.RY0402.092781	antisense	CDS\|outside_mRNA	58
LMJ.RY0402.092781_3	LMJ.RY0402.092781	antisense	intron\|outside_mRNA	73
LMJ.RY0402.103679_1	LMJ.RY0402.103679	antisense	intron\|outside_mRNA	95
LMJ.RY0402.103679_2	LMJ.RY0402.103679	antisense	intron\|outside_mRNA	95
LMJ.RY0402.116677_1	LMJ.RY0402.116677	antisense	CDS\|outside_mRNA	73
LMJ.RY0402.116703_2	LMJ.RY0402.116703	sense	intron\|outside_mRNA	73
LMJ.RY0402.122685_1	LMJ.RY0402.122685	antisense	intron\|outside_mRNA	95
LMJ.RY0402.122685_2	LMJ.RY0402.122685	antisense	intron\|outside_mRNA	95
LMJ.RY0402.129979_3	LMJ.RY0402.129979	sense	3'UTR\|outside_mRNA	73
LMJ.RY0402.137471_1	LMJ.RY0402.137471	sense	CDS\|outside_mRNA	73
LMJ.RY0402.147136_1	LMJ.RY0402.147136	antisense	intron\|outside_mRNA	95
LMJ.RY0402.147136_2	LMJ.RY0402.147136	antisense	CDS\|outside_mRNA	95
LMJ.RY0402.153821_1	LMJ.RY0402.153821	antisense	CDS\|outside_mRNA	73
LMJ.RY0402.153821_2	LMJ.RY0402.153821	antisense	CDS\|outside_mRNA	73
LMJ.RY0402.154846_1	LMJ.RY0402.154846	sense	intron\|outside_mRNA	95
LMJ.RY0402.154846_2	LMJ.RY0402.154846	sense	intron\|outside_mRNA	95
LMJ.RY0402.159028_1	LMJ.RY0402.159028	antisense	intron\|outside_mRNA	95
LMJ.RY0402.159028_2	LMJ.RY0402.159028	antisense	intron\|outside_mRNA	95
LMJ.RY0402.167387_1	LMJ.RY0402.167387	sense	CDS\|outside_mRNA	73
LMJ.RY0402.167387_2	LMJ.RY0402.167387	antisense	CDS\|outside_mRNA	58
LMJ.RY0402.179271_3	LMJ.RY0402.179271	antisense	intron\|outside_mRNA	95
LMJ.RY0402.179271_4	LMJ.RY0402.179271	sense	intron\|outside_mRNA	95
LMJ.RY0402.186364_1	LMJ.RY0402.186364	sense	CDS\|outside_mRNA	73
LMJ.RY0402.188472_1	LMJ.RY0402.188472	antisense	intron\|outside_mRNA	73
LMJ.RY0402.197274_1	LMJ.RY0402.197274	antisense	intron\|outside_mRNA	95
LMJ.RY0402.197274_2	LMJ.RY0402.197274	antisense	CDS\|outside_mRNA	95
LMJ.RY0402.210724_3	LMJ.RY0402.210724	sense	intron\|outside_mRNA	58
LMJ.RY0402.221989_2	LMJ.RY0402.221989	antisense	intron\|outside_mRNA	73
LMJ.RY0402.226637_1	LMJ.RY0402.226637	sense	CDS\|outside_mRNA	73
LMJ.RY0402.226637_2	LMJ.RY0402.226637	antisense	3'UTR\|outside_mRNA	73

Gene Annotations

PFAM:	PF00704, PF00059, PF00059
PANTHER:	PTHR11177:SF44 PTHR11177
KEGG_ec:
KEGG_orthology:
KOG:	KOG2806, KOG4462
Gene ontology terms::	GO:0004553, GO:0005975, GO:0005488, GO:0005488
Best arabidopsis TAIR name:	AT4G19800.1
Best arabidopsis TAIR symbol:
Best arabidopsis TAIR defline:	Glycosyl hydrolase family protein with chitinase insertion domai
Phytozome Locus Page

Phenotypes

Mutants in this gene exhibit a phenotype under the following conditions:

Paromomycin, screen 3 of 6 ( 98% confidence (FDR = 0.013))

Paromomycin, screen 4 of 6 ( 72% confidence (FDR = 0.28))

Note: FDR indicates the likelihood that a particular genotype-phenotype relationship is incorrect. Not all mutants in a particular gene show the same phenotype. Please see the mutant pages for each mutant's phenotypes. Complementation is needed to definitively prove a genotype-phenotype link. These data are from a pooled phenotyping experiment.

If you reference the phenotypic data above in a manuscript, please cite: Fauser et al. 2022 Nature Genetics.

Gene: Cre10.g451600 (Genome version: v5.3)