Gene: Cre10.g451600

Overview

Common name:SRR28,SRR28B
Defline:(1 of 1) PF00059//PF00704//PF14295 - Lectin C-type domain (Lectin_C) // Glycosyl hydrolases family 18 (Glyco_hydro_18) // PAN domain (PAN_4); Lectin-domain glycosyl hydrolase
Description:Scavenger receptor cysteine-rich protein, to form a very large protein with multiple C-type lectin domains and a glycoside hydrolase family 18 domain; part of a group of 5 closely-related SRR proteins.
Synonyms:SRR28B,g11096.t2,SRR28
Chromosome:chromosome 10

Protein Localization

We did not create a plasmid for this gene.

Protein-Protein Interactions

Bait ID Bait Name Prey ID Prey Name Reference
Cre16.g678000 CPL22 Cre10.g451600 SRR28,SRR28B Wang et al. 2023

Mutant Strains

Insertion Junction Mutant Strain Insertion Junction Feature Confidence (%) Genome Version
CLIP2.008642_1 CLIP2.008642 intron 80 6.1
CLIP2.008642_2 CLIP2.008642 intron 80 6.1
CLIP2.022436_1 CLIP2.022436 intron 80 6.1
CLIP2.022436_2 CLIP2.022436 intron 80 6.1
CLIP2.032416_1 CLIP2.032416 CDS 80 6.1
CLIP2.032416_2 CLIP2.032416 CDS 80 6.1
CLIP2.032421_1 CLIP2.032421 CDS 80 6.1
CLIP2.032421_2 CLIP2.032421 CDS 80 6.1
CLIP2.034371_1 CLIP2.034371 intron 80 6.1
CLIP2.034371_2 CLIP2.034371 intron 80 6.1
LMJ.RY0402.045798_1 LMJ.RY0402.045798 CDS|outside_mRNA 95 5.5
LMJ.RY0402.045798_2 LMJ.RY0402.045798 intron|outside_mRNA 95 5.5
LMJ.RY0402.092781_2 LMJ.RY0402.092781 CDS|outside_mRNA 58 5.5
LMJ.RY0402.092781_3 LMJ.RY0402.092781 intron|outside_mRNA 73 5.5
LMJ.RY0402.103679_1 LMJ.RY0402.103679 intron|outside_mRNA 95 5.5
LMJ.RY0402.103679_2 LMJ.RY0402.103679 intron|outside_mRNA 95 5.5
LMJ.RY0402.116677_1 LMJ.RY0402.116677 CDS|outside_mRNA 73 5.5
LMJ.RY0402.116703_2 LMJ.RY0402.116703 intron|outside_mRNA 73 5.5
LMJ.RY0402.122685_1 LMJ.RY0402.122685 intron|outside_mRNA 95 5.5
LMJ.RY0402.122685_2 LMJ.RY0402.122685 intron|outside_mRNA 95 5.5
LMJ.RY0402.129979_3 LMJ.RY0402.129979 3'UTR|outside_mRNA 73 5.5
LMJ.RY0402.137471_1 LMJ.RY0402.137471 CDS|outside_mRNA 73 5.5
LMJ.RY0402.147136_1 LMJ.RY0402.147136 intron|outside_mRNA 95 5.5
LMJ.RY0402.147136_2 LMJ.RY0402.147136 CDS|outside_mRNA 95 5.5
LMJ.RY0402.153821_1 LMJ.RY0402.153821 CDS|outside_mRNA 73 5.5
LMJ.RY0402.153821_2 LMJ.RY0402.153821 CDS|outside_mRNA 73 5.5
LMJ.RY0402.154846_1 LMJ.RY0402.154846 intron|outside_mRNA 95 5.5
LMJ.RY0402.154846_2 LMJ.RY0402.154846 intron|outside_mRNA 95 5.5
LMJ.RY0402.159028_1 LMJ.RY0402.159028 intron|outside_mRNA 95 5.5
LMJ.RY0402.159028_2 LMJ.RY0402.159028 intron|outside_mRNA 95 5.5
LMJ.RY0402.167387_1 LMJ.RY0402.167387 CDS|outside_mRNA 73 5.5
LMJ.RY0402.167387_2 LMJ.RY0402.167387 CDS|outside_mRNA 58 5.5
LMJ.RY0402.179271_3 LMJ.RY0402.179271 intron|outside_mRNA 95 5.5
LMJ.RY0402.179271_4 LMJ.RY0402.179271 intron|outside_mRNA 95 5.5
LMJ.RY0402.186364_1 LMJ.RY0402.186364 CDS|outside_mRNA 73 5.5
LMJ.RY0402.188472_1 LMJ.RY0402.188472 intron|outside_mRNA 73 5.5
LMJ.RY0402.197274_1 LMJ.RY0402.197274 intron|outside_mRNA 95 5.5
LMJ.RY0402.197274_2 LMJ.RY0402.197274 CDS|outside_mRNA 95 5.5
LMJ.RY0402.210724_3 LMJ.RY0402.210724 intron|outside_mRNA 58 5.5
LMJ.RY0402.221989_2 LMJ.RY0402.221989 intron|outside_mRNA 73 5.5
LMJ.RY0402.226637_1 LMJ.RY0402.226637 CDS|outside_mRNA 73 5.5
LMJ.RY0402.226637_2 LMJ.RY0402.226637 3'UTR|outside_mRNA 73 5.5
LMJ.SG0182.009710_1 LMJ.SG0182.009710 MULTIPLE_SPLICE_VARIANTS 75 5.3

Gene Annotations

PFAM:PF00059, PF00704, PF14295
PANTHER: PTHR11177 PTHR11177:SF157
KEGG_ec:EC:3.2.1.14
KEGG_orthology:
KOG:KOG2806, KOG4462
Gene ontology terms::GO:0004553, GO:0004568, GO:0005515, GO:0005576, GO:0005975, GO:0006032, GO:0006508
Best arabidopsis TAIR name:AT4G19800.1
Best arabidopsis TAIR symbol:
Best arabidopsis TAIR defline:Glycosyl hydrolase family protein with chitinase insertion domai
Phytozome Locus Page

Phenotypes

Mutants in this gene exhibit a phenotype under the following conditions:

Paromomycin, screen 3 of 6 ( 98% confidence (FDR = 0.013))
Paromomycin, screen 4 of 6 ( 72% confidence (FDR = 0.28))

Note: FDR indicates the likelihood that a particular genotype-phenotype relationship is incorrect. Not all mutants in a particular gene show the same phenotype. Please see the mutant pages for each mutant's phenotypes. Complementation is needed to definitively prove a genotype-phenotype link. These data are from a pooled phenotyping experiment.

If you reference the phenotypic data above in a manuscript, please cite: Fauser et al. 2022 Nature Genetics.