Gene: Cre04.g217951

Overview

Common name:	LCI33
Defline:	Low-CO2-inducible protein; (1 of 9) IPR011011//IPR013083 - Zinc finger, FYVE/PHD-type // Zinc finger, RING/FYVE/PHD-type
Description:	Low-CO2 inducible gene (homologous to unknown protein in Trypanosoma brucei) revealed by cDNA array analyses
Synonyms:	g4581.t1,Cre03.g209350.t1.2,Cre03.g209350.t1.1,LCI33
Chromosome:	chromosome 4

Protein Localization

We did not create a plasmid for this gene.

Protein-Protein Interactions

We did not determine any protein-protein interactions for this gene.

Mutant Strains

Insertion Junction	Mutant Strain	Insertion Junction Feature	Confidence (%)	Genome Version
CLIP2.001214_1	CLIP2.001214	CDS	80	6.1
CLIP2.001214_2	CLIP2.001214	CDS	80	6.1
CLIP2.003805_1	CLIP2.003805	intron	63	6.1
CLIP2.004250_1	CLIP2.004250	intron	80	6.1
CLIP2.005104_1	CLIP2.005104	intron	80	6.1
CLIP2.006131_3	CLIP2.006131	intron	80	6.1
CLIP2.006131_4	CLIP2.006131	intron	80	6.1
CLIP2.006413_2	CLIP2.006413	CDS	80	6.1
CLIP2.006413_3	CLIP2.006413	CDS	80	6.1
CLIP2.008939_1	CLIP2.008939	intron	80	6.1
CLIP2.010846_1	CLIP2.010846	CDS	80	6.1
CLIP2.010846_2	CLIP2.010846	CDS	80	6.1
CLIP2.013648_1	CLIP2.013648	intron	80	6.1
CLIP2.013648_2	CLIP2.013648	intron	80	6.1
CLIP2.014531_1	CLIP2.014531	CDS	80	6.1
CLIP2.014531_2	CLIP2.014531	CDS	80	6.1
CLIP2.018494_3	CLIP2.018494	CDS	80	6.1
CLIP2.018494_4	CLIP2.018494	CDS	80	6.1
CLIP2.019920_2	CLIP2.019920	5'UTR	80	6.1
CLIP2.020117_3	CLIP2.020117	CDS	80	6.1
CLIP2.020117_4	CLIP2.020117	CDS	80	6.1
CLIP2.021163_1	CLIP2.021163	CDS	80	6.1
CLIP2.021163_2	CLIP2.021163	CDS	80	6.1
CLIP2.025542_3	CLIP2.025542	3'UTR	80	6.1
CLIP2.025542_4	CLIP2.025542	3'UTR	80	6.1
CLIP2.025988_1	CLIP2.025988	CDS	80	6.1
CLIP2.025988_2	CLIP2.025988	CDS	80	6.1
CLIP2.030649_1	CLIP2.030649	intron	80	6.1
CLIP2.030649_2	CLIP2.030649	intron	80	6.1
CLIP2.032048_1	CLIP2.032048	CDS	63	6.1
CLIP2.032048_2	CLIP2.032048	CDS	80	6.1
CLIP2.032048_3	CLIP2.032048	CDS	80	6.1
CLIP2.032771_2	CLIP2.032771	CDS	80	6.1
CLIP2.035416_1	CLIP2.035416	CDS	80	6.1
CLIP2.035416_2	CLIP2.035416	CDS	80	6.1
CLIP2.037463_1	CLIP2.037463	CDS	80	6.1
CLIP2.037463_2	CLIP2.037463	CDS	80	6.1
CLIP2.037918_1	CLIP2.037918	CDS	80	6.1
CLIP2.037918_2	CLIP2.037918	CDS	80	6.1
CLIP2.040518_1	CLIP2.040518	CDS	80	6.1
CLIP2.040730_1	CLIP2.040730	CDS	80	6.1
CLIP2.040730_2	CLIP2.040730	CDS	80	6.1
CLIP2.044917_1	CLIP2.044917	intron	80	6.1
CLIP2.045772_1	CLIP2.045772	CDS	80	6.1
CLIP2.045772_2	CLIP2.045772	CDS	80	6.1
CLIP2.047304_1	CLIP2.047304	5'UTR	80	6.1
CLIP2.047304_2	CLIP2.047304	5'UTR	80	6.1
CLIP2.051297_1	CLIP2.051297	intron	80	6.1
CLIP2.051297_2	CLIP2.051297	intron	80	6.1
CLIP2.052713_1	CLIP2.052713	intron	80	6.1
CLIP2.053718_1	CLIP2.053718	CDS	80	6.1
CLIP2.053718_2	CLIP2.053718	CDS	80	6.1
CLIP2.055542_1	CLIP2.055542	CDS	80	6.1
CLIP2.055542_2	CLIP2.055542	CDS	80	6.1
CLIP2.057726_1	CLIP2.057726	CDS	80	6.1
CLIP2.057726_2	CLIP2.057726	CDS	80	6.1
CLIP2.058549_2	CLIP2.058549	CDS	80	6.1
CLIP2.058549_3	CLIP2.058549	CDS	80	6.1
CLIP2.060531_1	CLIP2.060531	intron	80	6.1
CLIP2.065596_1	CLIP2.065596	3'UTR	80	6.1
CLIP2.065968_1	CLIP2.065968	CDS	80	6.1
CLIP2.066422_1	CLIP2.066422	intron	80	6.1
CLIP2.067445_1	CLIP2.067445	intron	63	6.1
CLIP2.067859_1	CLIP2.067859	5'UTR	80	6.1
CLIP2.067859_2	CLIP2.067859	5'UTR	80	6.1
CLIP2.068458_2	CLIP2.068458	intron	80	6.1
CLIP2.068846_1	CLIP2.068846	intron	80	6.1
CLIP2.068846_2	CLIP2.068846	intron	80	6.1
CLIP2.070225_1	CLIP2.070225	5'UTR	80	6.1
CLIP2.072003_2	CLIP2.072003	intron	80	6.1
CLIP2.072488_1	CLIP2.072488	CDS	80	6.1
CLIP2.072488_2	CLIP2.072488	CDS	80	6.1
CLIP2.072504_2	CLIP2.072504	intron	80	6.1
CLIP2.072504_3	CLIP2.072504	intron	80	6.1
CLIP2.072548_1	CLIP2.072548	CDS	80	6.1
CLIP2.073216_1	CLIP2.073216	intron	80	6.1
CLIP2.075664_1	CLIP2.075664	intron	63	6.1
CLIP2.076488_1	CLIP2.076488	intron	80	6.1
CLIP2.076488_2	CLIP2.076488	intron	80	6.1
CLIP2.078018_1	CLIP2.078018	intron	80	6.1
LMJ.RY0402.039349_2	LMJ.RY0402.039349	3'UTR	73	5.5
LMJ.RY0402.042450_1	LMJ.RY0402.042450	CDS	95	5.5
LMJ.RY0402.042450_2	LMJ.RY0402.042450	CDS	95	5.5
LMJ.RY0402.043117_1	LMJ.RY0402.043117	3'UTR	73	5.5
LMJ.RY0402.044616_1	LMJ.RY0402.044616	CDS	95	5.5
LMJ.RY0402.044616_2	LMJ.RY0402.044616	CDS	95	5.5
LMJ.RY0402.045892_1	LMJ.RY0402.045892	intron	73	5.5
LMJ.RY0402.049467_1	LMJ.RY0402.049467	intron	73	5.5
LMJ.RY0402.052647_2	LMJ.RY0402.052647	intron	95	5.5
LMJ.RY0402.052682_1	LMJ.RY0402.052682	5'UTR	73	5.5
LMJ.RY0402.053024_3	LMJ.RY0402.053024	CDS	58	5.5
LMJ.RY0402.053219_1	LMJ.RY0402.053219	intron	95	5.5
LMJ.RY0402.053219_2	LMJ.RY0402.053219	intron	95	5.5
LMJ.RY0402.054433_1	LMJ.RY0402.054433	CDS	73	5.5
LMJ.RY0402.054869_1	LMJ.RY0402.054869	CDS	95	5.5
LMJ.RY0402.054869_2	LMJ.RY0402.054869	intron	95	5.5
LMJ.RY0402.055208_1	LMJ.RY0402.055208	CDS	95	5.5
LMJ.RY0402.055208_2	LMJ.RY0402.055208	intron	95	5.5
LMJ.RY0402.060353_1	LMJ.RY0402.060353	5'UTR	73	5.5
LMJ.RY0402.067190_1	LMJ.RY0402.067190	5'UTR	73	5.5
LMJ.RY0402.070012_1	LMJ.RY0402.070012	intron	73	5.5
LMJ.RY0402.076028_1	LMJ.RY0402.076028	3'UTR	73	5.5
LMJ.RY0402.077989_1	LMJ.RY0402.077989	CDS	58	5.5
LMJ.RY0402.078825_1	LMJ.RY0402.078825	3'UTR	58	5.5
LMJ.RY0402.078935_1	LMJ.RY0402.078935	intron	73	5.5
LMJ.RY0402.081335_1	LMJ.RY0402.081335	5'UTR	95	5.5
LMJ.RY0402.081335_2	LMJ.RY0402.081335	CDS	95	5.5
LMJ.RY0402.083214_1	LMJ.RY0402.083214	3'UTR	73	5.5
LMJ.RY0402.083644_1	LMJ.RY0402.083644	CDS	73	5.5
LMJ.RY0402.085644_2	LMJ.RY0402.085644	5'UTR	73	5.5
LMJ.RY0402.086979_2	LMJ.RY0402.086979	3'UTR	73	5.5
LMJ.RY0402.097247_1	LMJ.RY0402.097247	CDS	73	5.5
LMJ.RY0402.097910_1	LMJ.RY0402.097910	CDS	73	5.5
LMJ.RY0402.101381_1	LMJ.RY0402.101381	intron	95	5.5
LMJ.RY0402.101381_2	LMJ.RY0402.101381	intron	95	5.5
LMJ.RY0402.106935_1	LMJ.RY0402.106935	intron	73	5.5
LMJ.RY0402.108364_3	LMJ.RY0402.108364	5'UTR	95	5.5
LMJ.RY0402.108364_4	LMJ.RY0402.108364	5'UTR	95	5.5
LMJ.RY0402.109852_3	LMJ.RY0402.109852	CDS	73	5.5
LMJ.RY0402.112369_2	LMJ.RY0402.112369	intron	73	5.5
LMJ.RY0402.115590_2	LMJ.RY0402.115590	CDS	73	5.5
LMJ.RY0402.117186_1	LMJ.RY0402.117186	CDS	95	5.5
LMJ.RY0402.117186_2	LMJ.RY0402.117186	CDS	95	5.5
LMJ.RY0402.117382_2	LMJ.RY0402.117382	intron	73	5.5
LMJ.RY0402.119290_1	LMJ.RY0402.119290	intron	95	5.5
LMJ.RY0402.119290_2	LMJ.RY0402.119290	intron	95	5.5
LMJ.RY0402.120088_1	LMJ.RY0402.120088	3'UTR	95	5.5
LMJ.RY0402.120088_2	LMJ.RY0402.120088	3'UTR	95	5.5
LMJ.RY0402.120324_1	LMJ.RY0402.120324	CDS	95	5.5
LMJ.RY0402.120324_2	LMJ.RY0402.120324	CDS	95	5.5
LMJ.RY0402.123214_1	LMJ.RY0402.123214	intron	58	5.5
LMJ.RY0402.124811_1	LMJ.RY0402.124811	CDS	73	5.5
LMJ.RY0402.125566_2	LMJ.RY0402.125566	3'UTR	73	5.5
LMJ.RY0402.125651_1	LMJ.RY0402.125651	3'UTR	73	5.5
LMJ.RY0402.129041_1	LMJ.RY0402.129041	intron	58	5.5
LMJ.RY0402.129355_1	LMJ.RY0402.129355	intron	95	5.5
LMJ.RY0402.129355_2	LMJ.RY0402.129355	intron	95	5.5
LMJ.RY0402.131475_2	LMJ.RY0402.131475	intron	73	5.5
LMJ.RY0402.132321_1	LMJ.RY0402.132321	intron	73	5.5
LMJ.RY0402.132848_2	LMJ.RY0402.132848	intron	73	5.5
LMJ.RY0402.133294_1	LMJ.RY0402.133294	CDS	95	5.5
LMJ.RY0402.133294_2	LMJ.RY0402.133294	CDS	95	5.5
LMJ.RY0402.133952_2	LMJ.RY0402.133952	CDS	73	5.5
LMJ.RY0402.135449_1	LMJ.RY0402.135449	CDS	73	5.5
LMJ.RY0402.137941_1	LMJ.RY0402.137941	intron	95	5.5
LMJ.RY0402.137941_2	LMJ.RY0402.137941	intron	95	5.5
LMJ.RY0402.138239_1	LMJ.RY0402.138239	5'UTR	73	5.5
LMJ.RY0402.138582_1	LMJ.RY0402.138582	intron	73	5.5
LMJ.RY0402.139065_1	LMJ.RY0402.139065	intron	73	5.5
LMJ.RY0402.139285_1	LMJ.RY0402.139285	intron	95	5.5
LMJ.RY0402.140368_2	LMJ.RY0402.140368	3'UTR	73	5.5
LMJ.RY0402.140615_1	LMJ.RY0402.140615	intron	73	5.5
LMJ.RY0402.143988_1	LMJ.RY0402.143988	CDS	58	5.5
LMJ.RY0402.144017_2	LMJ.RY0402.144017	CDS	73	5.5
LMJ.RY0402.146505_1	LMJ.RY0402.146505	CDS	73	5.5
LMJ.RY0402.148193_1	LMJ.RY0402.148193	intron	73	5.5
LMJ.RY0402.148467_1	LMJ.RY0402.148467	intron	73	5.5
LMJ.RY0402.152789_1	LMJ.RY0402.152789	3'UTR	73	5.5
LMJ.RY0402.158330_1	LMJ.RY0402.158330	CDS	73	5.5
LMJ.RY0402.158555_1	LMJ.RY0402.158555	CDS	95	5.5
LMJ.RY0402.158555_2	LMJ.RY0402.158555	CDS	95	5.5
LMJ.RY0402.158922_1	LMJ.RY0402.158922	CDS	73	5.5
LMJ.RY0402.163551_1	LMJ.RY0402.163551	CDS	58	5.5
LMJ.RY0402.165016_1	LMJ.RY0402.165016	CDS	73	5.5
LMJ.RY0402.166859_1	LMJ.RY0402.166859	intron	73	5.5
LMJ.RY0402.167003_1	LMJ.RY0402.167003	5'UTR	95	5.5
LMJ.RY0402.167003_2	LMJ.RY0402.167003	5'UTR	95	5.5
LMJ.RY0402.167334_1	LMJ.RY0402.167334	intron	73	5.5
LMJ.RY0402.168737_1	LMJ.RY0402.168737	intron	73	5.5
LMJ.RY0402.168838_2	LMJ.RY0402.168838	CDS	95	5.5
LMJ.RY0402.168838_3	LMJ.RY0402.168838	CDS	95	5.5
LMJ.RY0402.169051_3	LMJ.RY0402.169051	CDS	58	5.5
LMJ.RY0402.170868_1	LMJ.RY0402.170868	CDS	73	5.5
LMJ.RY0402.172420_1	LMJ.RY0402.172420	intron	73	5.5
LMJ.RY0402.173371_2	LMJ.RY0402.173371	5'UTR	95	5.5
LMJ.RY0402.173674_1	LMJ.RY0402.173674	CDS	73	5.5
LMJ.RY0402.174351_2	LMJ.RY0402.174351	CDS	73	5.5
LMJ.RY0402.176370_1	LMJ.RY0402.176370	5'UTR	95	5.5
LMJ.RY0402.176370_2	LMJ.RY0402.176370	5'UTR	95	5.5
LMJ.RY0402.177792_3	LMJ.RY0402.177792	intron	58	5.5
LMJ.RY0402.181919_1	LMJ.RY0402.181919	CDS	73	5.5
LMJ.RY0402.182587_1	LMJ.RY0402.182587	intron	95	5.5
LMJ.RY0402.182587_2	LMJ.RY0402.182587	intron	95	5.5
LMJ.RY0402.185137_2	LMJ.RY0402.185137	5'UTR	73	5.5
LMJ.RY0402.185223_1	LMJ.RY0402.185223	CDS	73	5.5
LMJ.RY0402.185852_1	LMJ.RY0402.185852	CDS	73	5.5
LMJ.RY0402.187339_1	LMJ.RY0402.187339	CDS	95	5.5
LMJ.RY0402.187339_2	LMJ.RY0402.187339	CDS	95	5.5
LMJ.RY0402.187423_2	LMJ.RY0402.187423	5'UTR	73	5.5
LMJ.RY0402.192916_1	LMJ.RY0402.192916	3'UTR	73	5.5
LMJ.RY0402.195793_1	LMJ.RY0402.195793	3'UTR	95	5.5
LMJ.RY0402.195793_2	LMJ.RY0402.195793	3'UTR	95	5.5
LMJ.RY0402.196538_1	LMJ.RY0402.196538	intron	73	5.5
LMJ.RY0402.197337_1	LMJ.RY0402.197337	CDS	73	5.5
LMJ.RY0402.198600_2	LMJ.RY0402.198600	3'UTR	73	5.5
LMJ.RY0402.198739_1	LMJ.RY0402.198739	CDS	73	5.5
LMJ.RY0402.199952_1	LMJ.RY0402.199952	intron	73	5.5
LMJ.RY0402.201387_1	LMJ.RY0402.201387	CDS	73	5.5
LMJ.RY0402.203834_1	LMJ.RY0402.203834	intron	73	5.5
LMJ.RY0402.205905_1	LMJ.RY0402.205905	intron	73	5.5
LMJ.RY0402.207680_1	LMJ.RY0402.207680	intron	95	5.5
LMJ.RY0402.207680_2	LMJ.RY0402.207680	intron	95	5.5
LMJ.RY0402.208031_1	LMJ.RY0402.208031	intron	95	5.5
LMJ.RY0402.208031_2	LMJ.RY0402.208031	intron	95	5.5
LMJ.RY0402.210834_1	LMJ.RY0402.210834	intron	73	5.5
LMJ.RY0402.211133_1	LMJ.RY0402.211133	CDS	73	5.5
LMJ.RY0402.211449_4	LMJ.RY0402.211449	CDS	95	5.5
LMJ.RY0402.211644_3	LMJ.RY0402.211644	intron	73	5.5
LMJ.RY0402.212594_2	LMJ.RY0402.212594	CDS	58	5.5
LMJ.RY0402.212950_3	LMJ.RY0402.212950	intron	73	5.5
LMJ.RY0402.213940_1	LMJ.RY0402.213940	intron	58	5.5
LMJ.RY0402.214191_1	LMJ.RY0402.214191	CDS	73	5.5
LMJ.RY0402.214254_1	LMJ.RY0402.214254	intron	73	5.5
LMJ.RY0402.214341_2	LMJ.RY0402.214341	5'UTR	73	5.5
LMJ.RY0402.214512_1	LMJ.RY0402.214512	intron	73	5.5
LMJ.RY0402.215380_1	LMJ.RY0402.215380	CDS	73	5.5
LMJ.RY0402.218504_1	LMJ.RY0402.218504	intron	95	5.5
LMJ.RY0402.218504_2	LMJ.RY0402.218504	intron	95	5.5
LMJ.RY0402.220593_1	LMJ.RY0402.220593	intron	73	5.5
LMJ.RY0402.220709_1	LMJ.RY0402.220709	CDS	73	5.5
LMJ.RY0402.222785_1	LMJ.RY0402.222785	CDS	58	5.5
LMJ.RY0402.224260_1	LMJ.RY0402.224260	intron	58	5.5
LMJ.RY0402.225562_1	LMJ.RY0402.225562	CDS	95	5.5
LMJ.RY0402.225562_2	LMJ.RY0402.225562	CDS	95	5.5
LMJ.RY0402.225620_1	LMJ.RY0402.225620	intron	58	5.5
LMJ.RY0402.226935_1	LMJ.RY0402.226935	CDS	95	5.5
LMJ.RY0402.226935_2	LMJ.RY0402.226935	CDS	95	5.5
LMJ.RY0402.227425_1	LMJ.RY0402.227425	intron	73	5.5
LMJ.RY0402.227665_1	LMJ.RY0402.227665	CDS	95	5.5
LMJ.RY0402.227665_2	LMJ.RY0402.227665	CDS	95	5.5
LMJ.RY0402.227849_2	LMJ.RY0402.227849	5'UTR	73	5.5
LMJ.RY0402.227849_3	LMJ.RY0402.227849	5'UTR	73	5.5
LMJ.RY0402.229278_1	LMJ.RY0402.229278	intron	95	5.5
LMJ.RY0402.229278_2	LMJ.RY0402.229278	intron	95	5.5
LMJ.RY0402.230888_3	LMJ.RY0402.230888	CDS	73	5.5
LMJ.RY0402.235154_1	LMJ.RY0402.235154	CDS	73	5.5
LMJ.RY0402.236964_1	LMJ.RY0402.236964	intron	73	5.5
LMJ.RY0402.237903_1	LMJ.RY0402.237903	CDS	58	5.5
LMJ.RY0402.237909_1	LMJ.RY0402.237909	CDS	73	5.5
LMJ.RY0402.239394_1	LMJ.RY0402.239394	5'UTR	73	5.5
LMJ.RY0402.240270_1	LMJ.RY0402.240270	intron	73	5.5
LMJ.RY0402.240956_1	LMJ.RY0402.240956	CDS	95	5.5
LMJ.RY0402.240956_2	LMJ.RY0402.240956	CDS	95	5.5
LMJ.RY0402.241054_1	LMJ.RY0402.241054	CDS	73	5.5
LMJ.RY0402.241224_1	LMJ.RY0402.241224	CDS	73	5.5
LMJ.RY0402.241254_1	LMJ.RY0402.241254	5'UTR	95	5.5
LMJ.RY0402.241254_2	LMJ.RY0402.241254	5'UTR	95	5.5
LMJ.RY0402.245011_2	LMJ.RY0402.245011	intron	58	5.5
LMJ.RY0402.246418_1	LMJ.RY0402.246418	intron	73	5.5
LMJ.RY0402.254601_1	LMJ.RY0402.254601	5'UTR	73	5.5
LMJ.RY0402.254610_1	LMJ.RY0402.254610	3'UTR	95	5.5
LMJ.RY0402.254610_2	LMJ.RY0402.254610	3'UTR	95	5.5
LMJ.RY0402.254774_1	LMJ.RY0402.254774	CDS	95	5.5
LMJ.RY0402.254774_2	LMJ.RY0402.254774	CDS	95	5.5
LMJ.RY0402.256089_1	LMJ.RY0402.256089	intron	95	5.5
LMJ.RY0402.256089_2	LMJ.RY0402.256089	intron	95	5.5

Gene Annotations

PFAM:
PANTHER:	PTHR13555 PTHR13555:SF2
KEGG_ec:
KEGG_orthology:
KOG:
Gene ontology terms::
Best arabidopsis TAIR name:
Best arabidopsis TAIR symbol:
Best arabidopsis TAIR defline:
Phytozome Locus Page

Phenotypes

Mutants in this gene exhibit a phenotype under the following conditions:

Photosynthesis or light sensitivity, screen 8 of 12 ( 77% confidence (FDR = 0.23))

Note: FDR indicates the likelihood that a particular genotype-phenotype relationship is incorrect. Not all mutants in a particular gene show the same phenotype. Please see the mutant pages for each mutant's phenotypes. Complementation is needed to definitively prove a genotype-phenotype link. These data are from a pooled phenotyping experiment.

If you reference the phenotypic data above in a manuscript, please cite: Fauser et al. 2022 Nature Genetics.